Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   JN531_RS11675 Genome accession   NZ_CP092104
Coordinates   2473228..2474580 (+) Length   450 a.a.
NCBI ID   WP_228349040.1    Uniprot ID   -
Organism   Flagellatimonas centrodinii strain R2A-3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2468228..2479580
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JN531_RS11660 (JN531_011660) - 2468937..2469629 (-) 693 WP_228349037.1 FHA domain-containing protein -
  JN531_RS11665 (JN531_011665) - 2469683..2470504 (-) 822 WP_228349038.1 Stp1/IreP family PP2C-type Ser/Thr phosphatase -
  JN531_RS11670 (JN531_011670) - 2470514..2473171 (-) 2658 WP_228349039.1 serine/threonine-protein kinase -
  JN531_RS11675 (JN531_011675) radA 2473228..2474580 (+) 1353 WP_228349040.1 DNA repair protein RadA Machinery gene
  JN531_RS11680 (JN531_011680) - 2474590..2475846 (-) 1257 WP_228349041.1 HlyC/CorC family transporter -
  JN531_RS11685 (JN531_011685) ccsA 2475926..2476720 (-) 795 WP_228349042.1 cytochrome c biogenesis protein CcsA -
  JN531_RS11690 (JN531_011690) - 2476769..2477536 (+) 768 WP_228349043.1 3',5'-cyclic-nucleotide phosphodiesterase -
  JN531_RS11695 (JN531_011695) - 2477582..2478265 (+) 684 WP_228349044.1 TIGR00153 family protein -
  JN531_RS11700 (JN531_011700) - 2478274..2479524 (+) 1251 WP_228349045.1 inorganic phosphate transporter -

Sequence

Protein


Download         Length: 450 a.a.        Molecular weight: 47884.26 Da        Isoelectric Point: 8.0750

>NTDB_id=655885 JN531_RS11675 WP_228349040.1 2473228..2474580(+) (radA) [Flagellatimonas centrodinii strain R2A-3]
MAKTRTQYVCQRCGAASPKWAGQCGDCGEWNTLVEVEAAGPRRSGFAPLVAGSAVEQLDQVSLADVPRASTGSAEMDRVL
GGGVVPGGVTLIGGDPGIGKSTLLLQLLAHMQGLYRTLYVTGEESLTQVRLRAERLGLPRMDLPVLAETRVEAVLAQIEA
QKPGFVVLDSIQTLYTDALDSAPGSVSQLRECAAQVVRHAKRSQTAVVLVGHVTKEGAIAGPRVLEHMVDTVLYFEHDEG
SRYRIVRAVKNRFGAVNELAVFAMTDGGLKEVNNPSALFLSRHAQPVPGSVVTVTRQGSRPMLVEVQALVDRSLLGTPRR
VTLGLESNRLNLLLAVLHRHGGVALGDQDVFANVVGGMKIQEPAADLPLLLAALSSMRGRPVPTGWVVFGEVGLAGEIRP
VQAGEERLLEAAKQGFTHAIVPEANKPRKSAKLGIEVMAVSRLEQAIALV

Nucleotide


Download         Length: 1353 bp        

>NTDB_id=655885 JN531_RS11675 WP_228349040.1 2473228..2474580(+) (radA) [Flagellatimonas centrodinii strain R2A-3]
ATGGCGAAGACGCGAACCCAGTATGTCTGTCAGCGCTGTGGCGCCGCCAGCCCCAAATGGGCGGGGCAATGTGGCGACTG
TGGCGAGTGGAACACCCTGGTCGAGGTGGAGGCGGCGGGGCCGCGTCGAAGCGGTTTTGCGCCGCTGGTGGCAGGTTCGG
CGGTGGAGCAGCTCGACCAGGTCTCGTTGGCCGATGTCCCGAGGGCCTCCACCGGGTCTGCCGAGATGGACCGGGTGCTC
GGCGGCGGTGTGGTGCCGGGCGGCGTCACCCTGATCGGCGGCGATCCGGGCATCGGCAAGTCGACCCTGCTGTTGCAATT
GCTGGCGCATATGCAGGGTTTGTACCGCACCCTGTATGTCACCGGTGAGGAATCGCTCACACAAGTGCGCCTGCGTGCCG
AGAGACTGGGGCTGCCGCGAATGGACCTGCCGGTGCTGGCGGAAACCCGGGTCGAGGCGGTGCTGGCACAGATCGAGGCA
CAGAAGCCGGGCTTCGTCGTGCTCGATTCGATCCAGACGCTGTACACCGATGCGCTCGACTCCGCGCCTGGAAGCGTTTC
CCAGCTGCGCGAGTGTGCCGCCCAGGTGGTGCGCCATGCCAAGCGCAGCCAGACCGCCGTGGTGCTGGTCGGACACGTCA
CCAAGGAAGGGGCGATCGCCGGTCCTCGGGTACTCGAACACATGGTCGACACGGTGCTGTACTTCGAGCACGACGAAGGG
AGCCGCTATCGGATCGTGCGGGCGGTCAAGAACCGGTTCGGGGCTGTCAATGAGCTGGCGGTGTTCGCGATGACCGACGG
GGGGTTGAAGGAGGTCAACAACCCCTCAGCGCTGTTCCTGTCCAGACACGCACAGCCGGTCCCTGGTAGCGTCGTCACGG
TGACGCGTCAGGGCAGCCGGCCGATGCTGGTGGAAGTCCAGGCGCTGGTTGACCGGTCCCTGCTGGGCACGCCGCGACGG
GTGACCCTGGGGTTGGAGAGCAATCGGCTGAATCTGCTGCTGGCGGTGTTGCACCGGCATGGCGGGGTGGCGCTGGGTGA
TCAGGATGTCTTTGCCAACGTCGTCGGCGGCATGAAGATACAGGAGCCTGCGGCCGATCTTCCGCTATTGCTGGCTGCGC
TGTCGTCGATGCGCGGGCGGCCGGTCCCGACGGGCTGGGTGGTGTTTGGCGAAGTGGGCTTGGCGGGCGAAATTCGACCG
GTTCAGGCGGGCGAGGAGCGGCTGTTGGAAGCAGCTAAACAAGGCTTCACCCACGCCATCGTGCCGGAGGCCAACAAACC
GCGAAAATCGGCCAAGCTGGGCATTGAGGTCATGGCCGTGAGCCGGCTTGAACAGGCGATCGCCCTGGTGTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(80-217)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(358-425)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.018

100

0.484
  radA Streptococcus mitis SK321

45.011

100

0.451
  radA Streptococcus pneumoniae Rx1

45.011

100

0.451
  radA Streptococcus pneumoniae D39

45.011

100

0.451
  radA Streptococcus pneumoniae R6

45.011

100

0.451
  radA Streptococcus pneumoniae TIGR4

45.011

100

0.451
  radA Streptococcus mitis NCTC 12261

44.789

100

0.449