Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OG830_RS12975 Genome accession   NZ_CP108194
Coordinates   2845966..2847891 (+) Length   641 a.a.
NCBI ID   WP_313937174.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00121     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2840966..2852891
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG830_RS12960 (OG830_13010) - 2842184..2842489 (+) 306 WP_313941539.1 YtxH domain-containing protein -
  OG830_RS12965 (OG830_13015) - 2842550..2843995 (+) 1446 WP_326744328.1 FGGY family carbohydrate kinase -
  OG830_RS12970 (OG830_13020) rcrP 2844233..2845966 (+) 1734 WP_326744329.1 ABC transporter ATP-binding protein Regulator
  OG830_RS12975 (OG830_13025) rcrQ 2845966..2847891 (+) 1926 WP_313937174.1 ABC transporter ATP-binding protein Regulator
  OG830_RS12980 (OG830_13030) - 2847908..2849026 (-) 1119 WP_313937175.1 RNA polymerase sigma factor -
  OG830_RS12985 (OG830_13035) dnaG 2849252..2851156 (-) 1905 WP_313937176.1 DNA primase -
  OG830_RS12990 (OG830_13040) - 2851307..2852566 (-) 1260 WP_313937177.1 FAD/NAD(P)-binding oxidoreductase -

Sequence

Protein


Download         Length: 641 a.a.        Molecular weight: 69129.50 Da        Isoelectric Point: 5.3060

>NTDB_id=655858 OG830_RS12975 WP_313937174.1 2845966..2847891(+) (rcrQ) [Streptomyces sp. NBC_00121]
MAGPGGRMMAGGAPTDRSMDFKGSSKRLLKRFATEKASLYGMLAACVLSVGLSVVGPKILGKATDLVFAGVIGRRMPEGT
TKEQAVEGLRKTNSGLADLLSGVDFTPGHGIDFDAVGNVLLTALAVYVGAGLLMLVATRLSIRIINRVVFQLREDIQTKL
SRLPLSYFDRAKRGEVLSRATNDIDNISQTMQQTMGQLINSLLTIVGVLVMMFWISPLLALVALVTVPLSVVVATKVGKR
SQPQFVQQWKVTGKLNAHIEEMYTGHTLVKVFGRQEESAKDFAEQNDALYEASFRAQFNSGIMQPLMMFVSNLNYVLIAV
VGGLRVASGALSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERIFELLDAEEQGPDPVTGERPADPLGSVSLEK
VSFRYEPDKPLIENLSLNVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVTGGRIALDGVDVAKMSRDELRSGIGMVLQDTW
LFGGSIADNIAYGASREVTREEIEEAARAAHADRFIRTLPDGYDTVIDDEGTGVSAGEKQLITIARAFLSDPVILVLDEA
TSSVDTRTEVLIQKAMARLAHGRTSFVIAHRLSTIRDADVILVMENGSIVEQGTHDELLDAQGAYARLYAAQFAQAVAEV
D

Nucleotide


Download         Length: 1926 bp        

>NTDB_id=655858 OG830_RS12975 WP_313937174.1 2845966..2847891(+) (rcrQ) [Streptomyces sp. NBC_00121]
ATGGCCGGGCCTGGCGGACGCATGATGGCGGGCGGGGCGCCGACCGACCGGTCCATGGACTTCAAGGGGTCGTCGAAGCG
GCTGCTGAAGCGCTTCGCGACGGAGAAGGCCTCGCTGTACGGGATGCTGGCGGCCTGTGTGCTGAGCGTCGGCCTCTCGG
TGGTGGGACCGAAGATCCTCGGCAAGGCGACCGACCTGGTGTTCGCCGGCGTCATCGGCCGGCGGATGCCCGAGGGCACG
ACGAAGGAGCAGGCCGTCGAGGGCCTGCGCAAGACCAACAGCGGTCTGGCCGACCTGCTCTCCGGGGTCGACTTCACCCC
GGGCCACGGCATCGACTTCGATGCGGTGGGCAACGTACTGCTGACGGCGCTGGCGGTCTACGTCGGTGCCGGTCTGCTGA
TGCTGGTGGCCACCCGGCTGTCGATCCGGATCATCAACCGGGTCGTGTTCCAGCTGCGCGAGGACATCCAGACGAAGCTG
TCGCGGCTGCCGTTGTCGTACTTCGACCGGGCCAAGCGCGGCGAGGTGCTCAGCCGGGCGACGAACGACATCGACAACAT
CTCTCAGACGATGCAGCAGACGATGGGCCAGCTCATCAACTCCCTGCTCACCATCGTCGGCGTGCTGGTCATGATGTTCT
GGATCTCGCCGCTGCTGGCCCTGGTCGCTCTGGTGACGGTGCCGCTGTCGGTGGTCGTGGCGACGAAGGTCGGCAAGCGG
TCGCAGCCGCAGTTCGTGCAGCAGTGGAAGGTGACGGGCAAGCTCAACGCCCATATCGAGGAGATGTACACCGGGCACAC
CCTGGTGAAGGTCTTCGGGCGGCAGGAGGAGTCCGCGAAGGACTTCGCCGAGCAGAACGACGCACTGTACGAGGCGAGCT
TCCGGGCGCAGTTCAACAGCGGGATCATGCAGCCGCTGATGATGTTCGTGTCGAACCTGAACTATGTGCTGATAGCCGTC
GTCGGTGGGCTGCGGGTCGCGTCGGGTGCGCTGTCGATCGGTGACGTCCAGGCGTTCATCCAGTACTCGCGGCAGTTCTC
GATGCCGCTGACGCAGGTCGCCTCGATGGCGAACCTGGTGCAGTCGGGTGTCGCCTCGGCCGAGCGGATCTTCGAGCTGC
TGGACGCCGAGGAGCAGGGCCCGGACCCCGTGACGGGTGAGCGCCCGGCGGATCCGCTCGGCAGTGTCTCGCTGGAGAAG
GTGTCGTTCCGTTACGAGCCGGACAAGCCGCTCATCGAGAATCTGTCGCTGAACGTCGAGCCGGGCCACACGGTCGCGAT
CGTCGGCCCGACCGGCGCCGGCAAGACGACACTGGTCAACCTGCTGATGCGGTTCTACGAGGTGACCGGCGGCCGGATCG
CGCTCGACGGCGTCGACGTGGCGAAGATGTCGCGCGACGAGCTGCGGTCGGGGATCGGCATGGTCCTGCAGGACACCTGG
CTGTTCGGCGGGTCGATCGCGGACAACATCGCGTACGGCGCTTCGCGCGAGGTCACCCGGGAGGAGATCGAGGAGGCGGC
GAGGGCGGCCCACGCCGACCGCTTCATCCGTACCCTGCCGGACGGTTACGACACGGTGATCGACGACGAGGGCACCGGGG
TCAGCGCGGGCGAGAAGCAGCTGATCACCATCGCGCGGGCGTTCCTGTCGGACCCGGTGATCCTGGTGCTCGACGAGGCG
ACGAGCTCCGTCGACACCCGTACCGAGGTGCTGATCCAGAAGGCGATGGCCCGCCTCGCGCACGGCCGTACGAGCTTTGT
GATCGCGCACCGGCTCTCCACCATCCGGGACGCGGACGTCATCCTGGTGATGGAGAACGGGTCGATCGTCGAACAGGGCA
CGCACGACGAGCTGTTGGATGCGCAGGGGGCTTACGCCCGGCTGTACGCGGCGCAGTTCGCGCAGGCGGTCGCCGAGGTC
GACTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(413-562)

ABC transporter transmembrane region (ABC_membrane)

(58-350)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

40.199

93.916

0.378