Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG830_RS12970 Genome accession   NZ_CP108194
Coordinates   2844233..2845966 (+) Length   577 a.a.
NCBI ID   WP_326744329.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00121     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2839233..2850966
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG830_RS12940 (OG830_12990) - 2840612..2840809 (-) 198 WP_313937171.1 hypothetical protein -
  OG830_RS12960 (OG830_13010) - 2842184..2842489 (+) 306 WP_313941539.1 YtxH domain-containing protein -
  OG830_RS12965 (OG830_13015) - 2842550..2843995 (+) 1446 WP_326744328.1 FGGY family carbohydrate kinase -
  OG830_RS12970 (OG830_13020) rcrP 2844233..2845966 (+) 1734 WP_326744329.1 ABC transporter ATP-binding protein Regulator
  OG830_RS12975 (OG830_13025) rcrQ 2845966..2847891 (+) 1926 WP_313937174.1 ABC transporter ATP-binding protein Regulator
  OG830_RS12980 (OG830_13030) - 2847908..2849026 (-) 1119 WP_313937175.1 RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62883.97 Da        Isoelectric Point: 5.5462

>NTDB_id=655857 OG830_RS12970 WP_326744329.1 2844233..2845966(+) (rcrP) [Streptomyces sp. NBC_00121]
MLIKLLRAYLGPYKKPIMLLVALQLLQTCATLYLPSLNADIIDNGVVEGDTGYILEYGGIMIAVSIAQVVCNTGAVFYGA
RTAAALGRDVRASVFDRVQSFSAREVGRFGAPSLITRTTNDVQQVQMLVLMTFTMMVSAPIMCVGGIIMALGQDVPLSAV
LLAVVPVLGIAVSLIVRRMRPLFRTMQERLDTVNRVLREQITGNRVIRAFVRDGYEEKRFRGANTELTDVALSTGRLMAL
MFPTVMTVVNVSSIAVVWFGAHRIDSGGMEIGALTAFLSYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLETDSSVVP
PVKPVRELRAHGHLEVRAADFRYPGAEEPVLRSVELVARPGETTAIIGSTGSGKSTLLGLVPRLFDVTDGQVLVDGTDVR
TLEPALLAKTVSLVPQKPYLFSGTVATNLRYGNPDATDEELWHALEVAQAKEFVEELEHGLHAPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRRALSQETAEATVVIVAQRVSTIRDADRILVLDEGRVVGSGTHHELMDGN
QTYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=655857 OG830_RS12970 WP_326744329.1 2844233..2845966(+) (rcrP) [Streptomyces sp. NBC_00121]
GTGCTCATAAAACTCCTGCGGGCCTATCTCGGCCCGTACAAAAAACCGATCATGCTGTTGGTGGCTCTCCAGCTGCTGCA
GACCTGCGCCACCCTCTATCTCCCCTCCCTCAACGCCGACATCATTGACAACGGTGTCGTCGAAGGGGACACCGGCTACA
TCCTGGAGTACGGCGGCATCATGATCGCCGTCTCCATCGCCCAGGTCGTCTGCAACACGGGGGCCGTCTTCTACGGTGCG
CGCACTGCGGCCGCACTGGGCCGGGACGTCCGGGCGTCGGTCTTCGACCGGGTTCAGTCGTTCTCGGCACGTGAGGTCGG
GCGCTTCGGGGCACCCTCGCTGATCACCCGCACGACCAATGACGTCCAGCAGGTCCAGATGCTGGTCCTGATGACGTTCA
CCATGATGGTCTCGGCGCCGATCATGTGTGTCGGCGGCATCATCATGGCGCTCGGCCAGGACGTTCCGCTGTCGGCGGTG
CTGCTCGCGGTGGTGCCGGTGCTCGGCATCGCGGTGAGTCTCATCGTGCGGCGGATGCGGCCGCTGTTCCGCACGATGCA
GGAGCGGCTCGACACGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGGGTCATCCGCGCCTTCGTCCGCGACG
GGTACGAGGAGAAGCGGTTCCGCGGCGCCAACACCGAGTTGACCGACGTGGCGCTCTCCACGGGGCGTCTGATGGCGCTG
ATGTTCCCGACCGTGATGACGGTCGTGAACGTGTCGTCGATCGCCGTGGTCTGGTTCGGTGCGCACCGGATCGACAGCGG
CGGGATGGAGATCGGCGCGCTGACCGCGTTCCTCTCCTACCTGATGCAGATCGTCATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTGTGTGCCGAACGCATCCAGGAGGTGCTGGAGACCGATTCGAGCGTGGTGCCG
CCGGTCAAGCCGGTGCGGGAACTGCGCGCTCACGGTCATCTGGAGGTGCGGGCCGCGGACTTCCGCTACCCGGGCGCCGA
GGAGCCGGTGTTGCGGTCGGTGGAGCTGGTGGCACGCCCCGGCGAGACGACCGCGATCATCGGGTCGACGGGCAGCGGGA
AGTCGACACTGCTCGGCCTCGTACCGCGGCTGTTCGATGTGACGGACGGTCAGGTGCTGGTCGACGGCACGGACGTGCGG
ACGCTGGAGCCGGCGCTGCTGGCGAAGACGGTGAGTCTGGTTCCGCAGAAGCCGTACCTGTTCTCCGGGACGGTCGCGAC
GAATCTGCGGTACGGAAACCCGGACGCGACCGACGAGGAGCTGTGGCACGCGCTGGAGGTCGCGCAGGCCAAGGAGTTCG
TCGAGGAGCTGGAGCACGGGCTGCACGCGCCGATCGCACAGGGCGGCACCAATGTCTCCGGCGGGCAGCGGCAACGACTC
GCGATCGCGAGGACGCTGGTGCAGCGGCCGGAGATCTATCTCTTCGACGACTCGTTCTCCGCGCTCGACTATGCGACGGA
TGCCGCGCTGCGTCGGGCGCTGTCGCAGGAGACGGCCGAGGCGACCGTGGTGATAGTGGCGCAGCGGGTGTCCACCATCC
GTGACGCGGACCGGATCCTGGTGCTCGACGAGGGCCGGGTCGTCGGGTCCGGCACCCATCACGAGCTGATGGACGGCAAT
CAAACGTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCCGCGTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(352-498)

ABC transporter transmembrane region (ABC_membrane)

(18-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.909

99.133

0.406