Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   OXB_RS05270 Genome accession   NZ_AP013294
Coordinates   1019330..1019608 (-) Length   92 a.a.
NCBI ID   WP_041072465.1    Uniprot ID   -
Organism   Bacillus sp. OxB-1     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1014330..1024608
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OXB_RS05235 (OXB_1006) - 1014532..1014972 (+) 441 WP_041072451.1 YaaR family protein -
  OXB_RS05240 (OXB_1007) holB 1015021..1016025 (+) 1005 WP_041072453.1 DNA polymerase III subunit delta' -
  OXB_RS05245 (OXB_1008) - 1016018..1016845 (+) 828 WP_041072455.1 stage 0 sporulation family protein -
  OXB_RS05250 (OXB_1009) yabA 1016859..1017218 (+) 360 WP_041072457.1 DNA replication initiation control protein YabA -
  OXB_RS05255 (OXB_1010) - 1017390..1018139 (+) 750 WP_041072459.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  OXB_RS05260 (OXB_1011) - 1018123..1018410 (+) 288 WP_041072461.1 GIY-YIG nuclease family protein -
  OXB_RS05265 (OXB_1012) rsmI 1018388..1019278 (+) 891 WP_041072463.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  OXB_RS05270 (OXB_1013) abrB 1019330..1019608 (-) 279 WP_041072465.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  OXB_RS05275 (OXB_1014) metG 1019992..1021953 (+) 1962 WP_041072467.1 methionine--tRNA ligase -
  OXB_RS05280 (OXB_1015) - 1022335..1023102 (+) 768 WP_041072469.1 TatD family hydrolase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10431.29 Da        Isoelectric Point: 6.3465

>NTDB_id=65582 OXB_RS05270 WP_041072465.1 1019330..1019608(-) (abrB) [Bacillus sp. OxB-1]
MKSTGIVRKVDELGRVVIPIELRRTLGIAQKDALEIYVDDDRIILKKYMPNMTCSITGDVSDDNMRLIDGKLILSPKGAE
QLMKEIEENLKK

Nucleotide


Download         Length: 279 bp        

>NTDB_id=65582 OXB_RS05270 WP_041072465.1 1019330..1019608(-) (abrB) [Bacillus sp. OxB-1]
ATGAAATCTACCGGTATCGTAAGAAAGGTCGATGAACTGGGACGCGTAGTAATCCCTATCGAATTGCGTCGTACACTCGG
TATTGCGCAAAAAGATGCTCTCGAAATCTATGTGGATGATGATAGAATCATACTGAAGAAATACATGCCTAATATGACTT
GTTCCATTACTGGCGATGTATCCGACGACAATATGCGTCTCATCGATGGTAAATTAATTTTAAGTCCAAAAGGCGCAGAA
CAGCTGATGAAAGAAATCGAAGAGAATTTGAAAAAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)

AbrB C-terminal domain (AbrB_C)

(53-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

76.923

98.913

0.761

Multiple sequence alignment