NTDB

Overview

Name	radA	Type	Machinery gene
Locus tag	MB380_RS08315	Genome accession	NZ_CP092074
Coordinates	1965215..1966594 (+)	Length	459 a.a.
NCBI ID	WP_253534493.1	Uniprot ID	-
Organism	Emticicia sp. 21SJ11W-3
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1960215..1971594

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MB380_RS08290 (MB380_08290)	hpt	1960946..1961485 (-)	540	WP_253534486.1	hypoxanthine phosphoribosyltransferase	-
MB380_RS08295 (MB380_08295)	-	1961624..1962838 (+)	1215	WP_253534487.1	lipopolysaccharide assembly protein LapB	-
MB380_RS08300 (MB380_08300)	-	1962920..1963390 (-)	471	WP_101728498.1	Lrp/AsnC family transcriptional regulator	-
MB380_RS08305 (MB380_08305)	-	1963633..1964301 (+)	669	WP_253534489.1	NAD-dependent epimerase/dehydratase family protein	-
MB380_RS08310 (MB380_08310)	-	1964369..1964986 (-)	618	WP_253534491.1	porin family protein	-
MB380_RS08315 (MB380_08315)	radA	1965215..1966594 (+)	1380	WP_253534493.1	DNA repair protein RadA	Machinery gene
MB380_RS08320 (MB380_08320)	-	1966674..1968647 (-)	1974	WP_253534495.1	M1 family aminopeptidase	-
MB380_RS08325 (MB380_08325)	-	1968660..1971005 (-)	2346	WP_253534497.1	TonB-dependent receptor	-

Sequence

Protein

Download Length: 459 a.a. Molecular weight: 50800.23 Da Isoelectric Point: 5.0832

                                >NTDB_id=655800 MB380_RS08315 WP_253534493.1 1965215..1966594(+) (radA) [Emticicia sp. 21SJ11W-3]

MAKIRTAYFCQNCGYNSPKWLGRCPSCGEWNTLVEEVLTKEEPEKGNWKFSTSGAPKTASKPKTLAEISKHERYRIITED

NELNRVLGGGLVPGSLVLIGGEPGIGKSTLMLQIALGLQDYTVLYVSGEESEQQIKMRAERMGIMNERCYILNETSTDNI

FRQIELTEPDIVVVDSIQTLTSPLIESGAGSVSQVKECTAELMKFSKESDTPVIMIGHITKDGSLAGPKVLEHMVDTVLQ

FEGDRHMTYRILRTTKNRFGSTSELGIYEMQSEGLRQVSNPSEILISQREEDLSGITIAAMLEGNRPLLIEIQSLVSAAT

YGTPQRTSNGFDNRRLQMLLAVLEKRGGFRLGTQDVFLNIAGGLKVEDPAIDLAICTSLVSSFEDLSVPHLFCFAAEVGL

GGEVRAVNRIENRITEAEKLGFTKIFISKFNMKGLNPKNYKIEIFAASKLEEVFTELFG

Nucleotide

Download Length: 1380 bp

                                >NTDB_id=655800 MB380_RS08315 WP_253534493.1 1965215..1966594(+) (radA) [Emticicia sp. 21SJ11W-3]

ATGGCAAAAATCAGAACCGCATACTTCTGTCAGAATTGTGGCTATAATTCACCTAAATGGTTAGGTCGTTGCCCATCCTG

CGGTGAGTGGAACACCCTGGTTGAGGAGGTTCTCACAAAAGAAGAACCCGAGAAAGGTAACTGGAAGTTCTCAACATCTG

GCGCACCTAAAACGGCCAGTAAGCCTAAAACCCTGGCTGAGATTTCAAAACATGAAAGATACAGAATCATAACTGAGGAT

AATGAGTTAAATCGTGTGCTTGGCGGTGGGCTGGTACCGGGCTCGTTGGTTTTAATTGGCGGAGAACCGGGCATTGGTAA

GTCTACCCTAATGCTTCAGATAGCACTAGGGTTGCAAGATTATACGGTATTGTATGTGTCGGGCGAAGAAAGCGAGCAGC

AGATAAAAATGCGTGCCGAACGAATGGGTATCATGAACGAGCGCTGTTACATTCTGAATGAAACTTCTACTGACAATATT

TTCAGACAAATAGAGTTGACAGAACCAGATATTGTAGTAGTAGATTCTATTCAGACACTAACTTCACCTTTAATCGAATC

AGGCGCCGGGAGTGTGTCGCAGGTGAAGGAATGCACCGCAGAGCTAATGAAGTTCTCGAAAGAATCTGATACGCCGGTTA

TAATGATAGGGCATATAACCAAAGACGGCTCTTTGGCAGGGCCTAAAGTACTTGAGCACATGGTAGATACCGTTCTGCAA

TTTGAAGGCGACAGGCACATGACTTACCGGATACTGCGTACCACCAAAAACCGATTTGGCAGTACCTCTGAACTGGGCAT

TTATGAAATGCAGAGCGAAGGGCTCAGGCAGGTAAGTAATCCATCAGAAATATTGATTTCGCAGCGCGAAGAAGACCTGA

GTGGCATTACCATTGCTGCCATGCTGGAAGGTAACCGCCCCTTACTGATTGAGATACAGTCTTTAGTTAGTGCGGCTACT

TATGGTACGCCTCAAAGAACCAGCAATGGTTTTGATAACCGGCGTTTACAAATGCTATTGGCCGTTCTTGAAAAAAGAGG

GGGATTCAGGTTGGGTACTCAGGATGTATTTCTGAATATTGCAGGTGGGCTGAAGGTGGAAGACCCGGCCATTGATCTGG

CCATTTGCACATCGCTGGTGTCGTCATTTGAAGACCTAAGCGTGCCTCATTTGTTTTGTTTTGCCGCAGAGGTGGGTCTT

GGCGGAGAGGTACGCGCGGTAAACAGAATAGAAAACCGCATTACTGAAGCTGAAAAACTGGGTTTTACTAAGATATTTAT

TTCAAAGTTTAATATGAAAGGTTTGAATCCGAAAAACTATAAGATAGAAATTTTTGCTGCCAGTAAACTGGAAGAGGTTT

TTACTGAGCTTTTCGGATAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(76-223)

Subunit ChlI of Mg-chelatase (ChlI)

(345-430)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
radA	Streptococcus pneumoniae Rx1	50.976	100	0.512
radA	Streptococcus pneumoniae R6	50.976	100	0.512
radA	Streptococcus pneumoniae TIGR4	50.976	100	0.512
radA	Bacillus subtilis subsp. subtilis str. 168	50.976	100	0.512
radA	Streptococcus pneumoniae D39	50.976	100	0.512
radA	Streptococcus mitis NCTC 12261	50.87	100	0.51
radA	Streptococcus mitis SK321	50.87	100	0.51

Detailed information NTG0655800