Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OG737_RS16830 Genome accession   NZ_CP108191
Coordinates   3547553..3548953 (-) Length   466 a.a.
NCBI ID   WP_328926972.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00122     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3542553..3553953
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG737_RS16805 (OG737_16740) - 3542937..3543497 (-) 561 WP_319727094.1 SigE family RNA polymerase sigma factor -
  OG737_RS16810 (OG737_16745) - 3543705..3544613 (-) 909 WP_328926968.1 A/G-specific adenine glycosylase -
  OG737_RS16815 (OG737_16750) - 3544610..3545251 (-) 642 WP_328926969.1 phosphatase PAP2 family protein -
  OG737_RS16820 (OG737_16755) - 3545412..3546236 (+) 825 WP_405679095.1 hypothetical protein -
  OG737_RS16825 (OG737_16760) disA 3546268..3547392 (-) 1125 WP_328926971.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OG737_RS16830 (OG737_16765) radA/sms 3547553..3548953 (-) 1401 WP_328926972.1 DNA repair protein RadA Machinery gene
  OG737_RS16835 (OG737_16770) - 3549136..3550872 (+) 1737 WP_405921710.1 BACON domain-containing protein -
  OG737_RS16840 (OG737_16775) - 3550896..3551684 (-) 789 WP_328930367.1 hypothetical protein -
  OG737_RS16845 (OG737_16780) - 3551829..3552767 (+) 939 WP_328926974.1 Ppx/GppA phosphatase family protein -
  OG737_RS16850 (OG737_16785) - 3552869..3553720 (+) 852 WP_328926975.1 sugar phosphate isomerase/epimerase -

Sequence

Protein


Download         Length: 466 a.a.        Molecular weight: 48851.97 Da        Isoelectric Point: 8.2598

>NTDB_id=655800 OG737_RS16830 WP_328926972.1 3547553..3548953(-) (radA/sms) [Streptomyces sp. NBC_00122]
MAARTARSSAKDRPSYRCSECGWTTAKWLGRCPECQAWGTVEEMGTPAVRTTAAGRVSTAAVPIAQVDSRTATARSTGVD
ELDRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASDAHRTLYVTGEESASQVRLRADRINALNDHLYLAAETDLSA
VLGHLDAVRPSLLILDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVL
SFEGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRAEAVPGTCLTVTLEGKRPLVAEVQALTVDS
QIPSPRRTTSGLETSRVSMMLAVLEQRGRITALGKRDIYSATVGGVKLTEPAADLAIALALASAASDVPLPKNLVAIGEV
GLAGEVRRVTGVQRRLAEAHRLGFTHALVPSDPGKVPAGMKVVEVADMGDALRVLPRGRSRTPAKE

Nucleotide


Download         Length: 1401 bp        

>NTDB_id=655800 OG737_RS16830 WP_328926972.1 3547553..3548953(-) (radA/sms) [Streptomyces sp. NBC_00122]
ATGGCTGCCCGCACTGCTCGTTCATCCGCCAAGGACCGGCCGTCCTACCGCTGCTCCGAGTGCGGCTGGACGACGGCGAA
ATGGCTCGGGCGGTGTCCCGAATGCCAGGCGTGGGGCACCGTCGAGGAAATGGGCACGCCCGCCGTGCGGACCACCGCCG
CCGGCCGGGTGTCGACCGCCGCGGTGCCGATCGCGCAGGTCGACAGCCGGACGGCGACCGCGCGCAGCACCGGCGTGGAC
GAGCTGGACCGCGTACTCGGCGGCGGGCTCGTGCCCGGCGCCGTGGTGCTGCTCGCCGGGGAGCCCGGCGTGGGCAAGTC
GACGCTGCTGCTGGACGTCGCCGCGAAGGCCGCCAGCGATGCGCACCGCACCCTGTACGTCACGGGCGAGGAGAGCGCGA
GCCAGGTGCGGCTGCGCGCCGACCGGATCAACGCGCTGAACGACCACCTCTACCTGGCCGCCGAAACCGACCTGTCCGCC
GTACTGGGACACCTGGACGCGGTGCGGCCCTCCCTGCTGATCCTGGACTCCGTGCAGACCGTCGCCTCCCCGGAGATCGA
CGGCGCGCCCGGCGGCATGGCTCAGGTGCGCGAGGTCGCCGGGGCGCTGATCCGCGCCTCCAAGGAGCGCGGGATGTCCA
CGCTCCTCGTCGGCCACGTGACGAAGGACGGGGCGATCGCCGGCCCCCGCCTCCTGGAGCACCTGGTCGACGTGGTGCTG
AGCTTCGAGGGCGACCGGCACGCCCGGCTGCGGCTCGTGCGCGGCGTCAAGAACCGGTACGGGGCCACCGACGAGGTGGG
CTGCTTCGAACTGCACGACGAGGGGATCACCGGGCTCGCCGACCCGAGCGGGCTGTTCCTGACCCGGCGCGCCGAGGCCG
TGCCCGGGACCTGCCTGACCGTGACCCTGGAGGGCAAGCGCCCGCTGGTCGCCGAGGTGCAGGCGCTGACCGTGGACTCG
CAGATCCCCTCCCCGCGGCGCACCACGTCGGGCCTGGAGACCTCGCGCGTCTCGATGATGCTGGCGGTGCTGGAGCAGCG
CGGGCGGATCACCGCGCTGGGCAAGCGCGACATCTACAGCGCCACCGTGGGCGGGGTGAAGCTGACCGAGCCGGCCGCCG
ACCTGGCGATCGCGCTCGCGCTGGCCTCCGCCGCCAGCGACGTCCCGCTGCCGAAGAACCTCGTGGCGATCGGGGAGGTC
GGCCTCGCGGGTGAGGTGCGGCGGGTGACCGGCGTACAGCGGCGGCTCGCGGAGGCGCACCGGCTCGGCTTCACGCACGC
CCTCGTGCCCTCGGATCCGGGCAAGGTGCCCGCCGGGATGAAGGTCGTCGAGGTGGCCGACATGGGCGACGCGCTACGGG
TGCTGCCGCGCGGCCGTTCCCGTACTCCGGCCAAGGAGTAG

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(16-43)

Subunit ChlI of Mg-chelatase (ChlI)

(372-431)

AAA domain (AAA_25)

(83-224)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.929

97.21

0.427
  radA Streptococcus pneumoniae Rx1

43.142

96.996

0.418
  radA Streptococcus pneumoniae D39

43.142

96.996

0.418
  radA Streptococcus pneumoniae R6

43.142

96.996

0.418
  radA Streptococcus pneumoniae TIGR4

43.142

96.996

0.418
  radA Streptococcus mitis SK321

44.626

91.845

0.41
  radA Streptococcus mitis NCTC 12261

44.626

91.845

0.41