Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   OXB_RS05045 Genome accession   NZ_AP013294
Coordinates   972732..973850 (+) Length   372 a.a.
NCBI ID   WP_041072402.1    Uniprot ID   A0A0A8JGA3
Organism   Bacillus sp. OxB-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 967732..978850
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OXB_RS05025 (OXB_0969) rnpA 968275..968622 (-) 348 WP_041076318.1 ribonuclease P protein component -
  OXB_RS18360 (OXB_0970) rpmH 968750..968884 (-) 135 WP_084212392.1 50S ribosomal protein L34 -
  OXB_RS05030 (OXB_0971) dnaA 969700..971052 (+) 1353 WP_041072396.1 chromosomal replication initiator protein DnaA -
  OXB_RS05035 (OXB_0972) dnaN 971218..972354 (+) 1137 WP_041072398.1 DNA polymerase III subunit beta -
  OXB_RS05040 (OXB_0973) yaaA 972503..972742 (+) 240 WP_041072400.1 S4 domain-containing protein YaaA -
  OXB_RS05045 (OXB_0974) recF 972732..973850 (+) 1119 WP_041072402.1 DNA replication/repair protein RecF Machinery gene
  OXB_RS05050 (OXB_0975) gyrB 973935..975857 (+) 1923 WP_041076320.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  OXB_RS05055 (OXB_0976) gyrA 975942..978431 (+) 2490 WP_041072404.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 372 a.a.        Molecular weight: 42959.22 Da        Isoelectric Point: 7.2509

>NTDB_id=65580 OXB_RS05045 WP_041072402.1 972732..973850(+) (recF) [Bacillus sp. OxB-1]
MYIERLELTDYRNYASLDLSFSPQINVLIGENAQGKTNIMEAVYVLSMAKSHRTSNDRELIRWDQEHGKIKGDIQRKYGK
VPLELTISKKGKKARVNHLEQNRLSLYIGQLNVVMFAPEDLNLVKGSPQVRRRFLDMEIGQISPVYLHDLLTFQKVLKQR
NAILKDNRGRLDFSDVMFDIYTEQYIQVAVQIIRKRFYFMDLLQKWAEPIHRGISRGMETLEVSYGTLKELESGQTVEQM
EDILAKRLREVRRRELERGMTLVGPHRDDLHFFVNGYDIQTYGSQGQQRTTALSLKLAEIELVKQEIGEAPVLLLDDVLS
ELDDYRQSHLLNTIQGQVQTFVTTTNIAGIDHDTIRQAEIFEVSAGKATKIT

Nucleotide


Download         Length: 1119 bp        

>NTDB_id=65580 OXB_RS05045 WP_041072402.1 972732..973850(+) (recF) [Bacillus sp. OxB-1]
ATGTACATTGAACGACTGGAACTGACCGACTACCGGAACTACGCTTCTCTCGATTTATCTTTTTCTCCTCAAATTAATGT
GCTGATCGGCGAAAACGCGCAAGGCAAGACAAATATCATGGAGGCGGTCTATGTTTTGTCGATGGCAAAATCCCATCGAA
CTTCAAATGATCGTGAATTGATACGCTGGGACCAAGAACATGGTAAAATAAAAGGGGACATCCAACGGAAATACGGTAAG
GTGCCGTTGGAGTTGACCATTTCGAAAAAAGGGAAAAAGGCGCGTGTGAACCATTTGGAACAAAATCGCCTCAGCCTTTA
TATCGGTCAACTGAACGTTGTCATGTTCGCGCCGGAAGACTTGAATCTTGTAAAAGGCAGTCCGCAAGTGCGAAGGAGAT
TTTTGGACATGGAAATCGGCCAGATTTCTCCGGTTTACTTACATGACCTTCTGACATTTCAAAAAGTCTTGAAGCAACGG
AATGCGATTCTGAAAGACAATCGAGGAAGGCTGGACTTCTCCGATGTCATGTTTGATATTTATACAGAGCAGTATATTCA
AGTAGCTGTACAAATTATTCGCAAACGGTTCTACTTCATGGATCTCTTGCAGAAATGGGCGGAACCCATCCACCGGGGAA
TTTCCCGGGGAATGGAGACGCTTGAAGTTTCATATGGGACTTTAAAAGAGCTTGAATCCGGGCAGACTGTGGAGCAAATG
GAAGATATACTCGCGAAGCGTTTGCGTGAAGTGAGGAGGCGGGAATTGGAACGCGGCATGACGCTTGTCGGTCCGCATCG
GGACGATCTCCATTTCTTTGTCAACGGCTACGACATCCAGACGTATGGCTCGCAGGGGCAGCAGCGGACGACTGCACTGT
CCCTTAAACTCGCGGAAATCGAGCTGGTAAAACAGGAGATCGGCGAAGCGCCGGTTCTCCTGCTCGATGATGTATTATCC
GAATTGGATGATTATCGGCAATCCCATCTATTGAACACGATCCAAGGGCAAGTGCAAACCTTTGTCACTACGACGAATAT
TGCCGGAATTGACCATGATACTATCCGGCAAGCCGAAATTTTTGAAGTGTCGGCAGGCAAAGCAACAAAGATCACATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-346)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A8JGA3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

62.162

99.462

0.618

Multiple sequence alignment