Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OG737_RS11870 Genome accession   NZ_CP108191
Coordinates   2532146..2533123 (-) Length   325 a.a.
NCBI ID   WP_328926156.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00122     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 2527146..2538123
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG737_RS11845 (OG737_11800) - 2527254..2527664 (+) 411 WP_328926151.1 rodlin -
  OG737_RS11850 (OG737_11805) - 2527757..2528398 (-) 642 WP_328926152.1 vitamin K epoxide reductase family protein -
  OG737_RS11855 (OG737_11810) - 2528591..2529361 (+) 771 WP_328926153.1 DUF6227 family protein -
  OG737_RS11860 (OG737_11815) - 2529422..2531026 (-) 1605 WP_328926154.1 MFS transporter -
  OG737_RS11865 (OG737_11820) - 2531090..2532058 (+) 969 WP_328926155.1 WYL domain-containing protein -
  OG737_RS11870 (OG737_11825) rpoS 2532146..2533123 (-) 978 WP_328926156.1 sigma-70 family RNA polymerase sigma factor Regulator
  OG737_RS11875 (OG737_11830) - 2533319..2533852 (+) 534 WP_405921502.1 GNAT family N-acetyltransferase -
  OG737_RS11880 (OG737_11835) - 2533914..2534681 (-) 768 WP_328930311.1 class III extradiol ring-cleavage dioxygenase -
  OG737_RS11885 (OG737_11840) - 2534811..2536355 (-) 1545 WP_328926158.1 MFS transporter -
  OG737_RS11890 (OG737_11845) - 2536418..2537158 (-) 741 WP_405679762.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 325 a.a.        Molecular weight: 36517.36 Da        Isoelectric Point: 5.1285

>NTDB_id=655784 OG737_RS11870 WP_328926156.1 2532146..2533123(-) (rpoS) [Streptomyces sp. NBC_00122]
MATRAVARQQSTSSARAVGGEIADRDLVGMYLDEIARTPLLDAAKEVELSQIIEAGVYAQQILDGVIERKGETPAREELE
ALAAEGERAKEVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYAKGFKFSTYATWWIRQAITRSIADQ
SRTIRLPVHLVEELGRIRRIQREFNRENGRDPEHAEIAAELDSTEKRVGDVLDWARDPVSLNMSVDDQGETQFGDLLEDT
SAISPEQSVLSLLRSEELEDLLGKLDQRTASIIKMRYGIVDGRERTLTEVGKQHGLTRERIRQIEKHALLELKRMARDTG
FDAVA

Nucleotide


Download         Length: 978 bp        

>NTDB_id=655784 OG737_RS11870 WP_328926156.1 2532146..2533123(-) (rpoS) [Streptomyces sp. NBC_00122]
ATGGCAACCCGCGCCGTCGCCCGCCAGCAGTCCACGAGCAGCGCTCGCGCTGTGGGCGGGGAGATCGCAGACCGCGACCT
GGTCGGCATGTACCTGGACGAGATCGCACGCACCCCGCTGCTCGACGCCGCCAAGGAAGTGGAGCTCTCCCAGATCATCG
AGGCGGGCGTGTACGCCCAGCAGATCCTCGACGGCGTCATCGAGCGCAAGGGCGAGACGCCCGCGCGCGAGGAGCTGGAG
GCGCTGGCCGCCGAGGGTGAGCGCGCCAAGGAAGTCTTCATCCGGTCCAACCTGCGCCTCGTGGTGGCCGTCGCCCGCCG
CTACCCGCGCAGTGGTCTGCCCCTCCTCGACCTCATCCAGGAGGGCAACGCCGGTCTGGTCCGCGCGGTCGAGAAGTTCG
ACTACGCCAAGGGCTTCAAGTTCTCCACGTACGCGACGTGGTGGATCCGCCAGGCCATCACCCGCTCCATCGCGGACCAG
TCCCGCACCATCCGCCTCCCCGTCCACCTGGTCGAGGAGCTCGGCCGGATCCGCCGCATCCAGCGCGAGTTCAACCGCGA
GAACGGCCGGGACCCGGAGCACGCCGAGATCGCCGCCGAGCTCGACTCGACGGAGAAGCGCGTGGGCGACGTACTGGACT
GGGCGCGCGACCCGGTCAGCCTGAACATGTCGGTGGACGACCAGGGCGAGACGCAGTTCGGTGACCTCCTGGAGGACACC
TCCGCGATCTCCCCCGAGCAGTCCGTGCTCTCGCTGCTGCGCAGCGAGGAGCTGGAGGACCTGCTCGGCAAGCTCGACCA
GCGCACCGCGTCGATCATCAAGATGCGGTACGGCATCGTCGACGGCCGCGAGCGGACCCTGACGGAGGTCGGCAAGCAGC
ACGGCCTGACCCGTGAGCGGATCCGCCAGATCGAGAAGCACGCCCTTCTGGAACTCAAGCGCATGGCCCGCGACACCGGC
TTCGACGCCGTGGCCTGA

Domains

Predicted by InterProScan.

Sigma-70, region 4 (Sigma70_r4)

(261-313)

Sigma-70 region 3 (Sigma70_r3)

(172-248)

Sigma-70 region 2 (Sigma70_r2)

(93-162)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(26-59)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

37.618

98.154

0.369