Detailed information
Bioinformatically predicted
Overview
| Name | clpC | Type | Regulator |
| Locus tag | OXB_RS03550 | Genome accession | NZ_AP013294 |
| Coordinates | 670596..672716 (-) | Length | 706 a.a. |
| NCBI ID | WP_041071925.1 | Uniprot ID | A0A0A8JHA9 |
| Organism | Bacillus sp. OxB-1 | ||
| Function | degradation of ComX (predicted from homology) Competence regulation |
||
Genomic Context
Location: 665596..677716
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OXB_RS03530 (OXB_0658) | - | 665788..666261 (+) | 474 | WP_041071920.1 | TRAP transporter small permease | - |
| OXB_RS03535 (OXB_0659) | - | 666300..667577 (+) | 1278 | WP_041071921.1 | TRAP transporter large permease | - |
| OXB_RS03540 (OXB_0660) | - | 667657..669030 (+) | 1374 | WP_041071923.1 | FAD-linked oxidase C-terminal domain-containing protein | - |
| OXB_RS03545 (OXB_0661) | - | 669485..670189 (+) | 705 | WP_041071924.1 | bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2 | - |
| OXB_RS03550 (OXB_0662) | clpC | 670596..672716 (-) | 2121 | WP_041071925.1 | ATP-dependent Clp protease ATP-binding subunit | Regulator |
| OXB_RS03555 (OXB_0663) | - | 673105..674382 (-) | 1278 | WP_041071926.1 | IS110 family transposase | - |
| OXB_RS03560 (OXB_0664) | - | 674758..676134 (-) | 1377 | WP_041071928.1 | VWA domain-containing protein | - |
| OXB_RS03565 (OXB_0665) | - | 676364..676882 (+) | 519 | WP_041071930.1 | putative metal-dependent hydrolase | - |
Sequence
Protein
Download Length: 706 a.a. Molecular weight: 79035.94 Da Isoelectric Point: 4.9352
>NTDB_id=65574 OXB_RS03550 WP_041071925.1 670596..672716(-) (clpC) [Bacillus sp. OxB-1]
MKCQHCGKNEATVNFRLQLNRQAMQMHICQACYQEMQGQFAAGHMPSFSNEVNQFFQENGGKQARTQVRQAEGRAPGLLD
QLGKNLSDEAREGRIDPVIGRDGEIKRVIETLNRRNKNNPVLIGEPGVGKTAIAEGLAVKIQEGDVPAKLRNKEVYVLDV
ASLVTNTGIRGQFEERMKQLIEELESRSEVLLFVDEIHLLVGAGTAEGSKMDAGNILKPALARGTLQLIGATTLKEYRQI
EKDAALERRFQPIIVKEPSAEDAVQILNGIKDRYESYHEVRYPDEAVRACVTLSQRYIQDRFLPDKAIDLLDEAGARLNL
VQAEEDSDSMRARLQDIIQRKEQAAEQENYEKAAQLREEEMQLREKLEAAVQNGEIQQAEVTVAHIEQIIEEKTGIPVTK
LQAAEQAKMKGLAENLGKKVIGQAEAVDKIAKAIRRSRAGLKSKNRPIGSFLFVGPTGVGKTEITKVLAEELFGSRDSLI
RLDMSEYMEKHAVSKIIGSPPGYVGHEEAGQLTEQIRRNPYSIVLLDEIEKAHPDVQNMFLQIMEDGRLTDSHGRTVSFK
DTVIIMTSNAGTGVKTLSVGFNKTEHESVTMLETLGDYFKPEFLNRFDAIVAFNELTEENLLEIVDLMLEDVQEAIEEHQ
IDITITPEAKQALVRLGYDKRFGARPLRRVIQDKIEDPLTDLLLEGDPVEKVLVEAAEEDITVRRV
MKCQHCGKNEATVNFRLQLNRQAMQMHICQACYQEMQGQFAAGHMPSFSNEVNQFFQENGGKQARTQVRQAEGRAPGLLD
QLGKNLSDEAREGRIDPVIGRDGEIKRVIETLNRRNKNNPVLIGEPGVGKTAIAEGLAVKIQEGDVPAKLRNKEVYVLDV
ASLVTNTGIRGQFEERMKQLIEELESRSEVLLFVDEIHLLVGAGTAEGSKMDAGNILKPALARGTLQLIGATTLKEYRQI
EKDAALERRFQPIIVKEPSAEDAVQILNGIKDRYESYHEVRYPDEAVRACVTLSQRYIQDRFLPDKAIDLLDEAGARLNL
VQAEEDSDSMRARLQDIIQRKEQAAEQENYEKAAQLREEEMQLREKLEAAVQNGEIQQAEVTVAHIEQIIEEKTGIPVTK
LQAAEQAKMKGLAENLGKKVIGQAEAVDKIAKAIRRSRAGLKSKNRPIGSFLFVGPTGVGKTEITKVLAEELFGSRDSLI
RLDMSEYMEKHAVSKIIGSPPGYVGHEEAGQLTEQIRRNPYSIVLLDEIEKAHPDVQNMFLQIMEDGRLTDSHGRTVSFK
DTVIIMTSNAGTGVKTLSVGFNKTEHESVTMLETLGDYFKPEFLNRFDAIVAFNELTEENLLEIVDLMLEDVQEAIEEHQ
IDITITPEAKQALVRLGYDKRFGARPLRRVIQDKIEDPLTDLLLEGDPVEKVLVEAAEEDITVRRV
Nucleotide
Download Length: 2121 bp
>NTDB_id=65574 OXB_RS03550 WP_041071925.1 670596..672716(-) (clpC) [Bacillus sp. OxB-1]
ATGAAATGTCAACATTGCGGCAAAAACGAAGCAACGGTGAATTTTAGACTTCAACTGAACCGGCAGGCGATGCAAATGCA
CATATGCCAGGCATGCTACCAAGAGATGCAAGGTCAATTTGCGGCAGGACATATGCCTTCCTTCAGCAATGAAGTGAACC
AATTCTTCCAGGAGAACGGGGGGAAACAAGCCCGGACCCAAGTAAGACAAGCAGAAGGCCGTGCTCCCGGTCTGTTGGAC
CAGCTTGGCAAAAACTTGTCCGACGAAGCGAGAGAAGGGAGAATTGACCCGGTCATCGGACGGGATGGGGAAATCAAACG
TGTCATTGAAACATTGAATAGAAGAAATAAAAACAATCCTGTCCTGATCGGGGAGCCGGGCGTCGGTAAAACAGCGATTG
CGGAAGGGCTGGCGGTGAAGATCCAAGAAGGCGATGTGCCTGCGAAGCTGCGGAACAAAGAAGTGTATGTCCTTGACGTA
GCGTCACTTGTGACAAATACGGGCATTCGCGGCCAGTTTGAGGAACGGATGAAACAGCTGATCGAGGAATTGGAATCACG
GTCAGAAGTATTGTTGTTCGTAGACGAAATCCACCTGCTTGTAGGGGCAGGGACTGCGGAAGGATCCAAGATGGACGCCG
GGAATATTTTGAAACCGGCACTGGCCCGCGGTACTTTGCAGCTGATCGGCGCGACCACTTTAAAAGAGTACCGCCAAATT
GAAAAAGACGCGGCACTTGAACGACGTTTCCAACCGATTATCGTGAAAGAGCCGTCTGCGGAAGATGCTGTCCAGATTTT
GAACGGTATTAAAGATCGCTATGAAAGCTACCATGAAGTGCGGTATCCGGATGAAGCGGTGCGTGCTTGCGTTACATTAT
CGCAGCGTTATATCCAAGATCGATTCCTCCCGGATAAAGCGATTGACTTGCTAGATGAAGCAGGGGCCCGTTTGAATTTG
GTACAAGCCGAGGAGGATTCCGATTCCATGCGGGCCCGCCTGCAAGACATCATCCAGCGGAAAGAGCAGGCGGCAGAACA
GGAGAATTATGAAAAGGCTGCACAATTGCGCGAAGAAGAAATGCAGCTCCGAGAAAAACTGGAAGCTGCCGTGCAAAACG
GTGAAATTCAACAAGCAGAAGTGACTGTTGCCCATATCGAACAGATCATAGAAGAGAAGACAGGGATACCTGTAACGAAG
CTGCAGGCGGCGGAGCAAGCGAAAATGAAAGGACTTGCGGAAAACCTCGGCAAAAAAGTCATTGGACAAGCGGAAGCGGT
CGATAAAATTGCGAAAGCGATCCGCCGCAGCCGGGCCGGTCTCAAATCGAAAAATCGTCCGATCGGATCCTTCCTCTTCG
TTGGTCCGACGGGTGTCGGGAAAACGGAAATTACAAAAGTGTTGGCGGAAGAGTTATTCGGCTCTCGCGATTCGCTCATC
CGTCTCGACATGAGTGAGTACATGGAAAAACACGCGGTTTCGAAAATTATCGGTTCGCCTCCGGGCTATGTCGGTCATGA
GGAAGCGGGTCAATTGACGGAACAGATCCGCCGCAATCCATACTCGATTGTCCTGCTCGATGAAATCGAAAAAGCGCATC
CTGATGTGCAGAACATGTTCTTGCAAATCATGGAAGACGGGCGGCTGACCGATTCACACGGCCGGACGGTCAGCTTCAAA
GATACCGTCATCATTATGACGAGCAATGCCGGTACAGGCGTGAAGACGTTGAGCGTCGGTTTCAATAAAACCGAACATGA
ATCAGTGACGATGCTTGAAACATTGGGTGATTACTTCAAGCCGGAATTTCTGAACCGTTTTGATGCGATTGTGGCGTTCA
ATGAATTAACGGAAGAAAATCTTTTGGAAATCGTAGACTTGATGTTGGAAGATGTCCAAGAAGCGATTGAAGAACACCAG
ATTGACATCACCATCACGCCGGAAGCGAAACAGGCACTAGTCAGACTCGGCTATGACAAACGGTTCGGAGCCCGCCCGCT
CCGCAGAGTCATCCAGGACAAAATCGAAGATCCATTGACAGACCTTCTATTGGAAGGGGATCCTGTTGAAAAGGTCCTCG
TGGAGGCAGCAGAGGAAGACATCACAGTTCGGAGAGTATAA
ATGAAATGTCAACATTGCGGCAAAAACGAAGCAACGGTGAATTTTAGACTTCAACTGAACCGGCAGGCGATGCAAATGCA
CATATGCCAGGCATGCTACCAAGAGATGCAAGGTCAATTTGCGGCAGGACATATGCCTTCCTTCAGCAATGAAGTGAACC
AATTCTTCCAGGAGAACGGGGGGAAACAAGCCCGGACCCAAGTAAGACAAGCAGAAGGCCGTGCTCCCGGTCTGTTGGAC
CAGCTTGGCAAAAACTTGTCCGACGAAGCGAGAGAAGGGAGAATTGACCCGGTCATCGGACGGGATGGGGAAATCAAACG
TGTCATTGAAACATTGAATAGAAGAAATAAAAACAATCCTGTCCTGATCGGGGAGCCGGGCGTCGGTAAAACAGCGATTG
CGGAAGGGCTGGCGGTGAAGATCCAAGAAGGCGATGTGCCTGCGAAGCTGCGGAACAAAGAAGTGTATGTCCTTGACGTA
GCGTCACTTGTGACAAATACGGGCATTCGCGGCCAGTTTGAGGAACGGATGAAACAGCTGATCGAGGAATTGGAATCACG
GTCAGAAGTATTGTTGTTCGTAGACGAAATCCACCTGCTTGTAGGGGCAGGGACTGCGGAAGGATCCAAGATGGACGCCG
GGAATATTTTGAAACCGGCACTGGCCCGCGGTACTTTGCAGCTGATCGGCGCGACCACTTTAAAAGAGTACCGCCAAATT
GAAAAAGACGCGGCACTTGAACGACGTTTCCAACCGATTATCGTGAAAGAGCCGTCTGCGGAAGATGCTGTCCAGATTTT
GAACGGTATTAAAGATCGCTATGAAAGCTACCATGAAGTGCGGTATCCGGATGAAGCGGTGCGTGCTTGCGTTACATTAT
CGCAGCGTTATATCCAAGATCGATTCCTCCCGGATAAAGCGATTGACTTGCTAGATGAAGCAGGGGCCCGTTTGAATTTG
GTACAAGCCGAGGAGGATTCCGATTCCATGCGGGCCCGCCTGCAAGACATCATCCAGCGGAAAGAGCAGGCGGCAGAACA
GGAGAATTATGAAAAGGCTGCACAATTGCGCGAAGAAGAAATGCAGCTCCGAGAAAAACTGGAAGCTGCCGTGCAAAACG
GTGAAATTCAACAAGCAGAAGTGACTGTTGCCCATATCGAACAGATCATAGAAGAGAAGACAGGGATACCTGTAACGAAG
CTGCAGGCGGCGGAGCAAGCGAAAATGAAAGGACTTGCGGAAAACCTCGGCAAAAAAGTCATTGGACAAGCGGAAGCGGT
CGATAAAATTGCGAAAGCGATCCGCCGCAGCCGGGCCGGTCTCAAATCGAAAAATCGTCCGATCGGATCCTTCCTCTTCG
TTGGTCCGACGGGTGTCGGGAAAACGGAAATTACAAAAGTGTTGGCGGAAGAGTTATTCGGCTCTCGCGATTCGCTCATC
CGTCTCGACATGAGTGAGTACATGGAAAAACACGCGGTTTCGAAAATTATCGGTTCGCCTCCGGGCTATGTCGGTCATGA
GGAAGCGGGTCAATTGACGGAACAGATCCGCCGCAATCCATACTCGATTGTCCTGCTCGATGAAATCGAAAAAGCGCATC
CTGATGTGCAGAACATGTTCTTGCAAATCATGGAAGACGGGCGGCTGACCGATTCACACGGCCGGACGGTCAGCTTCAAA
GATACCGTCATCATTATGACGAGCAATGCCGGTACAGGCGTGAAGACGTTGAGCGTCGGTTTCAATAAAACCGAACATGA
ATCAGTGACGATGCTTGAAACATTGGGTGATTACTTCAAGCCGGAATTTCTGAACCGTTTTGATGCGATTGTGGCGTTCA
ATGAATTAACGGAAGAAAATCTTTTGGAAATCGTAGACTTGATGTTGGAAGATGTCCAAGAAGCGATTGAAGAACACCAG
ATTGACATCACCATCACGCCGGAAGCGAAACAGGCACTAGTCAGACTCGGCTATGACAAACGGTTCGGAGCCCGCCCGCT
CCGCAGAGTCATCCAGGACAAAATCGAAGATCCATTGACAGACCTTCTATTGGAAGGGGATCCTGTTGAAAAGGTCCTCG
TGGAGGCAGCAGAGGAAGACATCACAGTTCGGAGAGTATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpC | Lactococcus lactis subsp. cremoris KW2 |
56.421 |
100 |
0.585 |
| clpE | Streptococcus mutans UA159 |
56.033 |
100 |
0.572 |
| clpE | Streptococcus pneumoniae Rx1 |
53.899 |
100 |
0.558 |
| clpE | Streptococcus pneumoniae D39 |
53.899 |
100 |
0.558 |
| clpE | Streptococcus pneumoniae R6 |
53.899 |
100 |
0.558 |
| clpE | Streptococcus pneumoniae TIGR4 |
53.846 |
100 |
0.555 |
| clpC | Bacillus subtilis subsp. subtilis str. 168 |
52.244 |
88.385 |
0.462 |
| clpC | Streptococcus pneumoniae D39 |
46.582 |
89.093 |
0.415 |
| clpC | Streptococcus pneumoniae Rx1 |
46.582 |
89.093 |
0.415 |
| clpC | Streptococcus pneumoniae TIGR4 |
46.582 |
89.093 |
0.415 |
| clpC | Streptococcus thermophilus LMD-9 |
46.474 |
88.385 |
0.411 |
| clpC | Streptococcus thermophilus LMG 18311 |
46.154 |
88.385 |
0.408 |
| clpC | Streptococcus mutans UA159 |
46.067 |
88.244 |
0.407 |
| clpC | Lactococcus lactis subsp. lactis strain DGCC12653 |
44.741 |
90.227 |
0.404 |