Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OG427_RS22375 Genome accession   NZ_CP108183
Coordinates   4907802..4908800 (+) Length   332 a.a.
NCBI ID   WP_360867431.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00133     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 4902802..4913800
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG427_RS22350 (OG427_22315) - 4903100..4903747 (+) 648 WP_405890495.1 TetR/AcrR family transcriptional regulator -
  OG427_RS22355 (OG427_22320) - 4903927..4905453 (+) 1527 WP_405807887.1 MFS transporter -
  OG427_RS22360 (OG427_22325) - 4905611..4906135 (-) 525 WP_405811238.1 MarR family winged helix-turn-helix transcriptional regulator -
  OG427_RS22365 (OG427_22330) - 4906218..4907000 (+) 783 WP_405807888.1 dioxygenase -
  OG427_RS22370 (OG427_22335) - 4907096..4907653 (-) 558 WP_405807889.1 GNAT family N-acetyltransferase -
  OG427_RS22375 (OG427_22340) rpoS 4907802..4908800 (+) 999 WP_360867431.1 sigma-70 family RNA polymerase sigma factor Regulator
  OG427_RS22380 (OG427_22345) - 4908958..4909914 (-) 957 WP_405807890.1 helix-turn-helix transcriptional regulator -
  OG427_RS22385 (OG427_22350) - 4909977..4911482 (+) 1506 WP_405807891.1 MFS transporter -
  OG427_RS22390 (OG427_22355) - 4911573..4912337 (-) 765 WP_405890497.1 DUF6227 family protein -
  OG427_RS22395 (OG427_22360) - 4912481..4913548 (-) 1068 WP_405807892.1 P1 family peptidase -

Sequence

Protein


Download         Length: 332 a.a.        Molecular weight: 36908.57 Da        Isoelectric Point: 5.0356

>NTDB_id=655723 OG427_RS22375 WP_360867431.1 4907802..4908800(+) (rpoS) [Streptomyces sp. NBC_00133]
MATRAVARRQSASSGTGRASSVRAVGGEIADRDLVGMYLDEIARTPLLDAAKEVELSQTIEAGVYARHILDGEVESDAGG
ATREELEALVAEGERAKDIFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYAKGFKFSTYATWWIRQAI
TRSIADQSRTIRLPVHLVEELGRIRRVQREFNRENGREPEPAEIAQELASTPERVTDVLDWARDPVSLNMSVDDAGETQF
GDLLEDTSAISPEQSVLSLLRSEGLDDLIGKLDNRTASIIRMRYGIEDGRERTLTEVGKEHGLTRERIRQIEKHALLELK
RMARDTGFDAAA

Nucleotide


Download         Length: 999 bp        

>NTDB_id=655723 OG427_RS22375 WP_360867431.1 4907802..4908800(+) (rpoS) [Streptomyces sp. NBC_00133]
ATGGCAACCCGTGCCGTCGCCCGTCGTCAGTCCGCCTCCAGTGGGACCGGCCGGGCAAGCAGCGTTCGCGCCGTGGGCGG
GGAGATCGCCGACCGCGACCTGGTCGGCATGTATCTCGACGAGATCGCGCGTACGCCGCTGCTCGATGCCGCCAAGGAAG
TAGAGCTGTCGCAGACGATCGAGGCGGGTGTGTACGCCCGGCACATCCTCGACGGGGAAGTGGAGAGCGACGCGGGCGGC
GCGACGCGCGAAGAGCTGGAAGCGCTGGTCGCCGAGGGAGAGCGCGCGAAGGACATCTTCATACGCTCCAACCTCCGCCT
GGTGGTGGCCGTGGCGCGGCGCTATCCGCGCAGCGGGCTGCCTCTCCTCGACCTGATCCAGGAGGGCAACGCCGGTCTGG
TCCGTGCGGTCGAGAAGTTCGACTACGCCAAGGGCTTCAAGTTCTCGACGTACGCCACGTGGTGGATCCGGCAGGCGATC
ACCCGCTCCATAGCCGACCAGTCCCGCACGATCCGGCTCCCGGTCCACCTGGTGGAGGAGCTCGGACGGATCCGCCGTGT
CCAGCGCGAGTTCAACCGTGAGAACGGGCGGGAACCGGAGCCGGCGGAGATCGCGCAGGAGCTCGCCTCGACGCCGGAGC
GCGTGACGGACGTGCTCGACTGGGCGCGCGACCCGGTGAGCCTGAACATGTCGGTGGACGATGCAGGTGAGACGCAGTTC
GGCGACCTGCTGGAGGACACGTCCGCGATCTCGCCGGAGCAGTCGGTGCTTTCGCTGCTGCGCAGCGAGGGGCTGGACGA
CCTGATAGGCAAGCTCGACAACCGTACGGCGTCGATCATCCGGATGCGGTACGGCATCGAGGACGGACGTGAGCGCACGC
TGACTGAGGTCGGCAAGGAGCATGGCCTGACACGCGAGCGGATCCGCCAGATCGAGAAGCACGCGCTGCTCGAGCTGAAG
CGGATGGCACGCGACACGGGCTTCGACGCGGCGGCCTAA

Domains

Predicted by InterProScan.

Sigma-70, region 4 (Sigma70_r4)

(269-320)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(33-66)

Sigma-70 region 2 (Sigma70_r2)

(100-169)

Sigma-70 region 3 (Sigma70_r3)

(179-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

40

90.361

0.361