Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OG427_RS17145 Genome accession   NZ_CP108183
Coordinates   3786007..3787461 (+) Length   484 a.a.
NCBI ID   WP_405806953.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00133     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3781007..3792461
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG427_RS17125 (OG427_17100) - 3781417..3782244 (-) 828 WP_360871429.1 sugar phosphate isomerase/epimerase -
  OG427_RS17130 (OG427_17105) - 3782268..3783200 (-) 933 WP_360871426.1 Ppx/GppA phosphatase family protein -
  OG427_RS17135 (OG427_17110) - 3783241..3784074 (+) 834 WP_405806951.1 hypothetical protein -
  OG427_RS17140 (OG427_17115) - 3784092..3785777 (-) 1686 WP_405806952.1 BACON domain-containing protein -
  OG427_RS17145 (OG427_17120) radA/sms 3786007..3787461 (+) 1455 WP_405806953.1 DNA repair protein RadA Machinery gene
  OG427_RS17150 (OG427_17125) disA 3787506..3788630 (+) 1125 WP_360871416.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OG427_RS17155 (OG427_17130) - 3788703..3789509 (-) 807 WP_405806955.1 hypothetical protein -
  OG427_RS17160 (OG427_17135) - 3789857..3790783 (+) 927 WP_405890217.1 A/G-specific adenine glycosylase -
  OG427_RS17165 (OG427_17140) - 3790992..3791597 (+) 606 WP_360871407.1 SigE family RNA polymerase sigma factor -
  OG427_RS17170 (OG427_17145) - 3791585..3792247 (+) 663 WP_405806959.1 hypothetical protein -

Sequence

Protein


Download         Length: 484 a.a.        Molecular weight: 51016.15 Da        Isoelectric Point: 8.0101

>NTDB_id=655708 OG427_RS17145 WP_405806953.1 3786007..3787461(+) (radA/sms) [Streptomyces sp. NBC_00133]
MAARTKSAKDRPSYRCTECGWTTAKWLGRCPECQAWGTVEEYGAPAVRTTAAGRVSTAAVPIGQVDGRQATARSTGVDEL
DRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASDEHRTLYVTGEESASQVRLRADRINALHDHLYLAAETDLSAVL
GHLDAVKPSLLILDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLSF
EGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRDAPVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRITALGKRDIYSATVGGVKLSEPAADLAIALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLAEAHRLGFTHALVPSDPGKIPAGMKVTEVADMGDALRVLPRGRQRPSDGASVTAPRKERAEATRDD
DTRR

Nucleotide


Download         Length: 1455 bp        

>NTDB_id=655708 OG427_RS17145 WP_405806953.1 3786007..3787461(+) (radA/sms) [Streptomyces sp. NBC_00133]
ATGGCTGCCCGTACGAAATCCGCGAAGGACCGGCCGTCCTACCGTTGCACCGAATGCGGCTGGACGACCGCCAAGTGGCT
CGGCCGCTGCCCCGAATGCCAGGCCTGGGGCACGGTCGAGGAGTACGGCGCACCCGCGGTCCGCACCACGGCCGCCGGCC
GCGTCTCCACCGCCGCCGTTCCCATCGGCCAGGTCGACGGACGGCAGGCCACCGCACGCTCCACCGGCGTGGACGAGCTC
GACCGGGTCCTCGGCGGCGGTCTGGTGCCGGGCGCCGTCGTGCTGCTCGCGGGCGAGCCGGGCGTCGGCAAGTCCACGCT
GCTGCTCGACGTCGCGGCGAAGGCCGCAAGCGACGAGCACCGCACGCTGTATGTGACCGGCGAGGAGTCCGCGAGCCAGG
TGCGGCTGCGCGCCGACCGGATCAACGCCCTGCACGACCATCTCTATCTCGCCGCCGAGACCGATCTCTCCGCGGTCCTC
GGCCACTTGGACGCGGTCAAGCCGTCCCTGCTGATCCTCGACTCCGTACAGACCGTCGCATCCCCCGAGATCGACGGCGC
ACCCGGCGGCATGGCGCAGGTCCGCGAGGTCGCCGGCGCGCTGATCCGCGCCTCCAAGGAGCGCGGGATGTCCACGCTCC
TGGTCGGCCATGTCACCAAGGACGGCGCAATCGCCGGACCGCGACTCCTTGAGCATCTGGTGGACGTGGTGCTGTCCTTC
GAAGGCGACCGGCATGCGCGCCTGCGTCTCGTACGAGGCGTCAAGAACCGCTACGGCGCGACGGACGAGGTCGGCTGCTT
CGAGCTGCACGACGAGGGCATCACCGGGCTCGCCGACCCCTCGGGGCTCTTCCTCACCCGCCGGGACGCCCCGGTTCCGG
GCACCTGTCTGACGGTCACCCTCGAAGGGCGCCGCCCCCTCGTCGCCGAGGTGCAGGCGCTGACCGTCGACTCGCAGATC
CCCTCGCCCCGGCGCACAACCTCGGGTCTGGAGACCTCCCGGGTCTCGATGATGCTCGCGGTGCTGGAGCAGCGCGGCCG
GATCACCGCGCTCGGAAAGCGCGACATCTACAGCGCGACGGTGGGCGGAGTGAAGCTCTCCGAGCCCGCCGCGGACCTGG
CGATCGCGCTCGCGCTGGCCTCCGCCGCCAGCGACACCCCACTGCCCAAGAACCTGGTCGCGATCGGCGAGGTGGGACTT
GCGGGCGAGGTCAGAAGGGTCACGGGCGTCCAGCGCAGACTCGCCGAGGCACACCGTCTCGGCTTCACGCACGCCCTCGT
GCCGTCCGATCCGGGCAAGATCCCAGCCGGCATGAAGGTGACGGAAGTAGCCGACATGGGGGACGCGCTGAGGGTGCTCC
CGCGCGGGCGGCAGAGACCTTCCGACGGAGCCTCTGTAACGGCCCCGCGCAAAGAGCGTGCGGAGGCCACCCGGGACGAC
GACACGCGCCGGTAG

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(369-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)

AAA domain (AAA_25)

(82-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

44.15

93.595

0.413
  radA Streptococcus pneumoniae Rx1

42.699

93.388

0.399
  radA Streptococcus pneumoniae D39

42.699

93.388

0.399
  radA Streptococcus pneumoniae R6

42.699

93.388

0.399
  radA Streptococcus pneumoniae TIGR4

42.699

93.388

0.399
  radA Streptococcus mitis SK321

44.159

88.43

0.39
  radA Streptococcus mitis NCTC 12261

44.159

88.43

0.39