Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   OG427_RS10930 Genome accession   NZ_CP108183
Coordinates   2444937..2446160 (-) Length   407 a.a.
NCBI ID   WP_360875245.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00133     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2439937..2451160
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG427_RS10910 (OG427_10880) - 2440142..2440480 (-) 339 WP_084904268.1 P-II family nitrogen regulator -
  OG427_RS10915 (OG427_10885) - 2440477..2441838 (-) 1362 WP_360875253.1 ammonium transporter -
  OG427_RS10920 (OG427_10890) - 2442169..2443641 (-) 1473 WP_405805796.1 hypothetical protein -
  OG427_RS10925 (OG427_10895) - 2444068..2444730 (+) 663 WP_405805797.1 bifunctional DNA primase/polymerase -
  OG427_RS10930 (OG427_10900) pilA 2444937..2446160 (-) 1224 WP_360875245.1 signal recognition particle-docking protein FtsY Machinery gene
  OG427_RS10935 (OG427_10905) - 2446331..2447779 (+) 1449 WP_405805799.1 cytosine permease -
  OG427_RS10940 (OG427_10910) - 2447899..2448870 (+) 972 WP_405805801.1 LLM class flavin-dependent oxidoreductase -
  OG427_RS10945 (OG427_10915) - 2448994..2450409 (-) 1416 WP_405805802.1 sugar porter family MFS transporter -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 42611.68 Da        Isoelectric Point: 4.3521

>NTDB_id=655694 OG427_RS10930 WP_360875245.1 2444937..2446160(-) (pilA) [Streptomyces sp. NBC_00133]
MDIVILAVVIALVAVGAISGLVVSSRKKKQLPPSAPSSTPTITAPPAEPQVGEDAAPTVEEPRRTIEEVDLPSAGEAVET
PPAVEDPVVAAPPVPAIEIPEPTAGRLVRLRARLARSQNSLGKGLLTLLSRDNLDEETWEEIEDTLLTADVGVAPTQELV
ERLRERVRVLGTRTPDELRGLLREELLQLLGTDFDRAVNTESGLDTPGVVMVVGVNGTGKTTTTGKLARVLVADGRSVVL
GAADTFRAAAADQLQTWGERVGARTVRGPEGGDPASIAFDAVKEGIAEGADVVLIDTAGRLHTKTGLMDELGKVKRVVEK
HGPLDEILLVLDATTGQNGLVQARVFAEVVDITGIVLTKLDGTAKGGIVIAVQRELGVPVKLVGLGEGPDDLAPFEPEAF
VDALIGD

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=655694 OG427_RS10930 WP_360875245.1 2444937..2446160(-) (pilA) [Streptomyces sp. NBC_00133]
ATGGACATCGTCATCCTTGCTGTAGTCATCGCCCTGGTCGCGGTCGGCGCGATCAGCGGGCTCGTGGTCAGCAGCCGCAA
GAAGAAGCAGCTGCCGCCCTCGGCGCCGTCGAGCACGCCGACCATCACTGCCCCGCCCGCCGAACCTCAGGTCGGTGAGG
ACGCTGCGCCGACGGTCGAGGAGCCGCGCCGCACGATCGAGGAGGTCGACCTTCCGTCGGCCGGAGAGGCCGTCGAGACC
CCGCCCGCCGTCGAGGATCCGGTCGTCGCGGCACCGCCGGTCCCCGCGATCGAGATTCCCGAGCCGACCGCCGGCCGTCT
GGTCCGGCTGCGCGCCCGCCTCGCCCGCTCCCAGAACTCCCTCGGCAAGGGGCTGCTCACGCTCCTGTCGCGCGACAACC
TCGACGAGGAGACCTGGGAGGAGATCGAGGACACCCTGCTCACCGCCGACGTCGGCGTCGCACCGACCCAGGAGCTGGTC
GAGCGGCTGCGCGAGCGGGTGCGGGTCCTCGGCACGCGTACGCCCGACGAGCTGCGCGGTCTGCTGCGCGAAGAGCTGCT
TCAGCTGCTCGGTACGGACTTCGACCGCGCTGTGAACACCGAGAGCGGTCTGGACACCCCGGGCGTCGTGATGGTCGTCG
GTGTCAACGGCACCGGCAAGACCACGACGACGGGCAAGCTGGCGCGGGTGCTCGTCGCGGACGGTCGCTCGGTGGTGCTC
GGCGCGGCGGACACGTTCCGCGCGGCCGCCGCGGACCAGCTCCAGACCTGGGGCGAACGGGTCGGCGCACGCACGGTGCG
CGGTCCTGAGGGCGGCGACCCGGCGTCGATCGCGTTCGACGCGGTCAAGGAGGGCATCGCCGAGGGAGCGGATGTCGTAC
TCATCGACACGGCGGGCCGGCTGCACACCAAGACGGGCCTGATGGACGAGCTCGGCAAGGTCAAGCGAGTCGTCGAGAAG
CACGGTCCGCTGGACGAGATCCTGCTGGTCCTGGACGCGACGACCGGCCAGAACGGTCTGGTGCAGGCGCGGGTGTTCGC
GGAGGTCGTGGACATCACCGGCATCGTGCTGACCAAGCTGGACGGTACGGCGAAGGGCGGCATCGTGATCGCGGTCCAGC
GCGAACTGGGCGTACCGGTGAAGCTGGTGGGCCTGGGGGAGGGACCGGACGACCTGGCGCCGTTCGAGCCGGAGGCGTTC
GTCGACGCACTGATCGGCGACTAG

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(208-405)

SRP54-type protein, helical bundle domain (SRP54_N)

(121-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

39.518

100

0.403