Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG427_RS10080 Genome accession   NZ_CP108183
Coordinates   2243876..2244661 (+) Length   261 a.a.
NCBI ID   WP_360870052.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00133     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2238876..2249661
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG427_RS10070 (OG427_10045) - 2239705..2242593 (-) 2889 WP_405889960.1 vitamin B12-dependent ribonucleotide reductase -
  OG427_RS10075 (OG427_10050) nrdR 2242765..2243277 (-) 513 WP_355824232.1 transcriptional regulator NrdR -
  OG427_RS10080 (OG427_10055) dinR/lexA 2243876..2244661 (+) 786 WP_360870052.1 transcriptional repressor LexA Regulator
  OG427_RS10085 (OG427_10060) - 2244766..2246760 (-) 1995 WP_405805674.1 ATP-dependent DNA helicase -
  OG427_RS10090 (OG427_10065) - 2246837..2248756 (-) 1920 WP_405805676.1 IucA/IucC family protein -
  OG427_RS10095 (OG427_10070) - 2248816..2249580 (-) 765 WP_360870043.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 261 a.a.        Molecular weight: 28295.05 Da        Isoelectric Point: 8.0892

>NTDB_id=655690 OG427_RS10080 WP_360870052.1 2243876..2244661(+) (dinR/lexA) [Streptomyces sp. NBC_00133]
MTTTADSAAITAQDRSQNRFEPVHAMNDAATPPEGQKPTRSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPPSM
REIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSTQPTDTSGKPAASYVPLVGRIAAGGPILAEESV
EDVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLEGEATVKRFKRENGHVWLLPHNAAY
QPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 786 bp        

>NTDB_id=655690 OG427_RS10080 WP_360870052.1 2243876..2244661(+) (dinR/lexA) [Streptomyces sp. NBC_00133]
GTGACCACCACCGCAGACAGTGCCGCCATCACTGCCCAGGACCGCTCCCAGAACCGATTCGAGCCGGTGCATGCCATGAA
TGACGCAGCCACGCCCCCCGAGGGGCAGAAGCCCACGCGTTCGCTGCCCGGCCGACCTCCAGGTATCCGGGCCGACAGCT
CCGGACTCACGGATCGGCAGCGGCGCGTCATCGAGGTGATCCGCGACTCCGTGCAGCGTCGGGGATACCCGCCGTCGATG
CGTGAGATCGGCCAGGCTGTCGGGCTGTCCAGTACCTCCTCCGTCGCACATCAGCTGATGGCGCTGGAGCGCAAGGGCTT
CCTGCGCCGGGACCCGCACCGCCCCAGGGCGTATGAGGTGCGCGGCTCCGACCAGCCCAGCACCCAGCCGACGGACACCA
GCGGCAAGCCCGCCGCGTCGTACGTTCCGCTGGTCGGCAGGATCGCCGCCGGTGGCCCGATCCTCGCCGAGGAGTCGGTC
GAGGATGTGTTCCCGCTCCCCCGCCAGCTTGTCGGCGACGGCGAGCTGTTCGTACTGAAGGTCGTGGGCGACTCGATGAT
CGAGGCCGCGATCTGCGACGGGGACTGGGTTACGGTCCGCCGCCAGCCCGTCGCGGAGAACGGGGACATCGTGGCCGCGA
TGCTGGAGGGCGAGGCGACGGTCAAGCGCTTCAAGCGGGAGAACGGCCATGTGTGGCTCCTCCCGCACAATGCTGCGTAT
CAGCCCATTCCGGGTGACGAGGCGACGATTCTCGGCAAGGTGGTGGCTGTGCTTCGGCGGGTGTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(54-117)

Peptidase S24-like (Peptidase_S24)

(143-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

45.755

81.226

0.372