Detailed information NTG0065566

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: H7R03_RS17885
• Genome accession: NZ_AP022064
• Coordinates: 3661854..3662846 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain WP4-W18-ESBL-08
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3656854..3667846

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H7R03_RS17865 (WP4W18E08_34590)	ygbM	3657492..3658268 (+)	777	WP_001136914.1	HPr family phosphocarrier protein	-
H7R03_RS17870 (WP4W18E08_34600)	ygbN	3658357..3659721 (+)	1365	WP_000104433.1	GntP family transporter	-
H7R03_RS17875 (WP4W18E08_34610)	-	3659864..3660907 (-)	1044	WP_001161583.1	MBL fold metallo-hydrolase	-
H7R03_RS17880 (WP4W18E08_34620)	-	3661132..3661683 (+)	552	WP_001179444.1	flavodoxin family protein	-
H7R03_RS17885 (WP4W18E08_34630)	rpoS	3661854..3662846 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
H7R03_RS17890 (WP4W18E08_34640)	nlpD	3662909..3664003 (-)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
H7R03_RS17895 (WP4W18E08_34650)	pcm	3664188..3664814 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
H7R03_RS17900 (WP4W18E08_34660)	surE	3664808..3665569 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
H7R03_RS17905 (WP4W18E08_34670)	truD	3665550..3666599 (-)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
H7R03_RS17910 (WP4W18E08_34680)	ispF	3666596..3667075 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
H7R03_RS17915 (WP4W18E08_34690)	ispD	3667075..3667785 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=65566 H7R03_RS17885 WP_000081550.1 3661854..3662846(-) (rpoS) [Escherichia coli strain WP4-W18-ESBL-08]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=65566 H7R03_RS17885 WP_000081550.1 3661854..3662846(-) (rpoS) [Escherichia coli strain WP4-W18-ESBL-08]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715