Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OHB42_RS29635 Genome accession   NZ_CP108181
Coordinates   6599171..6600904 (-) Length   577 a.a.
NCBI ID   WP_266676323.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00134     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 6594171..6605904
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHB42_RS29625 (OHB42_29590) - 6595717..6597102 (+) 1386 WP_389570026.1 sigma-70 family RNA polymerase sigma factor -
  OHB42_RS29630 (OHB42_29595) rcrQ 6597246..6599171 (-) 1926 WP_266670298.1 ABC transporter ATP-binding protein Regulator
  OHB42_RS29635 (OHB42_29600) rcrP 6599171..6600904 (-) 1734 WP_266676323.1 ABC transporter ATP-binding protein Regulator
  OHB42_RS29640 (OHB42_29605) - 6601040..6602479 (-) 1440 WP_329435342.1 FGGY family carbohydrate kinase -
  OHB42_RS29645 (OHB42_29610) - 6602565..6602873 (-) 309 WP_266670294.1 YtxH domain-containing protein -
  OHB42_RS29665 (OHB42_29630) - 6603889..6604125 (+) 237 WP_266670292.1 hypothetical protein -
  OHB42_RS29670 - 6604140..6604394 (+) 255 WP_405603706.1 tyrosine-type recombinase/integrase -
  OHB42_RS29675 (OHB42_29635) - 6604722..6605276 (+) 555 WP_266670290.1 hypothetical protein -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62553.63 Da        Isoelectric Point: 6.1271

>NTDB_id=655654 OHB42_RS29635 WP_266676323.1 6599171..6600904(-) (rcrP) [Streptomyces sp. NBC_00134]
MLIRLLRTYLGPYKKPIGVLVLLQFLQTCASLYLPTLNADIIDNGVVKGDTGYILTFGAIMIAITVVQMVCNIGAVFYGA
RTAAALGRDVRASVFDRVQSFSAREMGQFGAPSLITRTTNDVQQVQMLTLMTFTLMVSAPIMCVGGIVMALGQDVPLSGV
LLAVVPVLGISVSLIVRRLRPLFRTMQVRLDTVNRVLREQITGNRVIRAFVRDGYEKDRFREANADLTEVSLGTGKLLAL
MFPIVMTVVNISSIAVVWFGAHRIDSGGMQIGALTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLSTESSVVP
PASPVRELRSHGHLEIRDAGFRYPGAEEPVLKAIQVTARPGETTAVIGSTGSGKSTLLGLVPRLFDATDGEVLVDGVDVR
TIDPALLARTVGLVPQKPYLFAGTVATNLRYGNPDATDEELWHALEVAQAKDFVKKLENGLDSPISQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALGHETSEATVVIVAQRVSTIRDADRIVVLDEGHVVGTGTHHELMDGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=655654 OHB42_RS29635 WP_266676323.1 6599171..6600904(-) (rcrP) [Streptomyces sp. NBC_00134]
GTGCTCATACGACTCCTGCGGACCTACCTCGGTCCGTACAAGAAACCCATCGGCGTGCTCGTACTGCTGCAGTTCCTGCA
GACCTGCGCGTCGCTCTATCTGCCCACCCTCAACGCGGACATCATTGACAACGGTGTCGTGAAGGGGGACACGGGCTACA
TCCTGACGTTCGGCGCCATCATGATCGCGATCACCGTGGTCCAGATGGTCTGCAACATCGGCGCCGTGTTCTACGGCGCC
CGCACCGCGGCCGCGCTCGGACGGGACGTCCGGGCCTCCGTGTTCGACCGCGTGCAGTCCTTCTCGGCGCGCGAGATGGG
CCAGTTCGGGGCGCCGTCCCTGATCACCCGCACGACGAACGACGTGCAGCAGGTCCAGATGCTCACGCTCATGACGTTCA
CGCTGATGGTGTCGGCGCCGATCATGTGTGTCGGCGGCATCGTCATGGCGCTGGGCCAGGACGTGCCCCTGTCGGGCGTG
CTGCTCGCCGTGGTCCCGGTCCTCGGGATCAGCGTCAGTCTGATCGTGCGCCGCCTGCGGCCGCTGTTCCGCACCATGCA
GGTGCGGCTCGACACGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGCGTCATCCGCGCCTTCGTGCGCGACG
GCTACGAGAAGGATCGCTTCCGCGAGGCCAACGCCGATCTGACCGAGGTCTCCCTCGGCACCGGCAAGCTCCTCGCGCTG
ATGTTCCCGATCGTCATGACCGTGGTGAACATCTCGTCGATTGCCGTCGTCTGGTTCGGCGCGCACCGCATCGACAGCGG
CGGCATGCAGATCGGCGCGCTCACCGCGTTCCTCGCCTATCTGATGCAGATCGTGATGAGCGTCATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTCTGCGCCGAGCGCATCCAGGAGGTCCTCTCCACCGAGTCCAGCGTCGTGCCG
CCGGCCTCGCCGGTGCGGGAGCTGCGCAGCCACGGCCACCTGGAGATCCGGGACGCGGGCTTCCGCTACCCGGGCGCCGA
GGAACCCGTGCTCAAGGCCATCCAGGTCACCGCGCGCCCCGGCGAGACGACCGCCGTCATCGGCTCGACCGGCAGCGGCA
AGTCCACCCTTCTCGGCCTGGTGCCGCGCCTGTTCGACGCGACGGACGGCGAGGTCCTGGTGGACGGTGTCGACGTGCGC
ACCATCGACCCCGCGCTGCTCGCCAGGACCGTCGGGCTCGTGCCGCAGAAGCCGTACCTCTTCGCGGGGACGGTCGCGAC
GAATCTGCGGTACGGCAATCCGGACGCGACCGACGAAGAGCTGTGGCACGCCCTGGAGGTGGCGCAGGCCAAGGACTTCG
TGAAGAAGCTGGAGAACGGGCTCGACTCCCCGATCTCGCAGGGCGGCACCAATGTGTCCGGCGGACAGCGCCAGCGGCTC
GCGATCGCGCGGACGCTGGTGCAGCGGCCCGAGATCTATCTCTTCGACGACTCGTTCTCCGCGCTCGACTACGCGACGGA
CGCCGCGCTGCGGGCCGCGCTGGGTCACGAGACCTCCGAGGCGACCGTGGTGATCGTGGCCCAGCGGGTCTCCACCATCC
GCGACGCGGACCGCATCGTGGTCCTCGACGAGGGCCATGTCGTGGGCACGGGCACCCATCACGAGCTGATGGACGGCAAT
GAGACATACCGGGAGATCGTTCTCTCCCAGCTGACGGAAGCGGAGGCGGCCTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(19-288)

ABC transporter (ABC_tran)

(351-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.821

97.054

0.386