Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OHB42_RS29630 Genome accession   NZ_CP108181
Coordinates   6597246..6599171 (-) Length   641 a.a.
NCBI ID   WP_266670298.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00134     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 6592246..6604171
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHB42_RS29615 (OHB42_29580) - 6592346..6593620 (+) 1275 WP_266670304.1 NAD(P)/FAD-dependent oxidoreductase -
  OHB42_RS29620 (OHB42_29585) dnaG 6593655..6595553 (+) 1899 WP_266670302.1 DNA primase -
  OHB42_RS29625 (OHB42_29590) - 6595717..6597102 (+) 1386 WP_389570026.1 sigma-70 family RNA polymerase sigma factor -
  OHB42_RS29630 (OHB42_29595) rcrQ 6597246..6599171 (-) 1926 WP_266670298.1 ABC transporter ATP-binding protein Regulator
  OHB42_RS29635 (OHB42_29600) rcrP 6599171..6600904 (-) 1734 WP_266676323.1 ABC transporter ATP-binding protein Regulator
  OHB42_RS29640 (OHB42_29605) - 6601040..6602479 (-) 1440 WP_329435342.1 FGGY family carbohydrate kinase -
  OHB42_RS29645 (OHB42_29610) - 6602565..6602873 (-) 309 WP_266670294.1 YtxH domain-containing protein -
  OHB42_RS29665 (OHB42_29630) - 6603889..6604125 (+) 237 WP_266670292.1 hypothetical protein -

Sequence

Protein


Download         Length: 641 a.a.        Molecular weight: 69184.59 Da        Isoelectric Point: 5.2050

>NTDB_id=655653 OHB42_RS29630 WP_266670298.1 6597246..6599171(-) (rcrQ) [Streptomyces sp. NBC_00134]
MAGPGGRMMAGGPDQRSMDFKGSGKRLIRQFKPEKTTMYAMVACVVLSVGLSVLGPKILGRATDLVFAGIIGRQMPAGSS
KAQVIEAMRAKGDSGVADMLSGIDFTPGQGIDFGAVGSVLGLALCTFLGAGLLMAVATRLSNLALNKTVFRMREDIQAKL
SRLPLSYFDKRQRGEVLSRATNDIDNIGQTLQQTMGQLINSLLTIIGVLVMMFWISPLLALVALVTVPLSFLIATRVGKR
SQPQFVQQWKTTGKLNAHIEEMYTGHNLVKVFGRQEESAKAFAEQNDALYEAGFKAQFNSGMMQPLMFFVSNLNYVLVAV
VGGLRVASGSLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERIFELLDADEQEADPVPGEKPDLLRGLVEFEN
VSFRYEQDKPLIEDLSLAVEPGHTVAIVGPTGAGKTTLVNLLLRFYEVTGGRITLDGVDVAKMSRDELRSGIGMVLQDTW
LFGGTIADNIAYGAAKDVTREQIEEAARAAHADRFIRTLPEGYDTVIDDEGSGVSAGEKQLITIARAFLSDPVILVLDEA
TSSVDTRTEVLIQKAMARLAHGRTSFVIAHRLSTIRDADTILVMESGDIVEQGTHDALRAAGGAYERLYEAQFAQAVAEV
E

Nucleotide


Download         Length: 1926 bp        

>NTDB_id=655653 OHB42_RS29630 WP_266670298.1 6597246..6599171(-) (rcrQ) [Streptomyces sp. NBC_00134]
ATGGCGGGGCCAGGCGGGCGGATGATGGCCGGGGGCCCCGACCAGCGTTCGATGGACTTCAAGGGCTCGGGCAAGCGGCT
CATCAGGCAGTTCAAGCCCGAGAAGACGACGATGTACGCGATGGTCGCGTGTGTCGTCCTGAGTGTGGGCCTGTCGGTGC
TGGGCCCGAAGATCCTGGGCCGGGCGACCGACCTGGTCTTCGCGGGCATCATCGGGCGTCAGATGCCCGCCGGGAGCAGC
AAGGCGCAGGTCATCGAGGCGATGCGGGCCAAGGGTGACTCCGGGGTCGCCGACATGCTCTCCGGGATCGACTTCACGCC
CGGCCAGGGCATCGACTTCGGGGCCGTGGGCTCCGTGCTCGGGCTCGCCCTGTGCACCTTCCTGGGGGCCGGTCTGCTGA
TGGCCGTGGCAACGCGGCTGTCCAACCTGGCGCTCAACAAGACCGTCTTCCGGATGCGCGAGGACATCCAGGCGAAGCTG
TCGCGCCTTCCGCTGTCGTACTTCGACAAGCGCCAGCGCGGTGAGGTCCTCAGCCGCGCCACGAACGACATCGACAACAT
CGGGCAGACGCTCCAGCAGACGATGGGCCAGCTCATCAACTCGCTGCTCACCATCATCGGTGTGCTGGTGATGATGTTCT
GGATCTCGCCGCTGCTCGCGCTGGTGGCACTGGTGACGGTGCCGCTGTCGTTCCTGATCGCGACGCGGGTCGGCAAGCGG
TCGCAGCCGCAGTTCGTGCAGCAGTGGAAGACCACCGGCAAGCTGAACGCGCACATCGAGGAGATGTACACCGGCCACAA
CCTGGTGAAGGTCTTCGGGCGCCAGGAGGAGTCGGCCAAGGCGTTCGCCGAGCAGAACGACGCGCTCTACGAGGCCGGGT
TCAAGGCACAGTTCAACAGCGGGATGATGCAGCCGCTGATGTTCTTCGTGTCGAACCTCAACTATGTGCTGGTCGCCGTG
GTGGGTGGCCTGCGGGTCGCCTCGGGTTCGCTGTCGATCGGTGACGTCCAGGCGTTCATCCAGTACTCGCGGCAGTTCTC
CATGCCGCTGACGCAGGTCGCCTCGATGGCGAACCTGGTGCAGTCGGGCGTCGCGTCGGCCGAGCGGATCTTCGAACTGC
TCGACGCGGACGAGCAGGAGGCCGACCCGGTGCCGGGCGAGAAGCCCGATCTGCTGCGCGGGCTCGTCGAGTTCGAGAAC
GTGTCCTTCCGCTACGAGCAGGACAAGCCGCTCATCGAGGACCTGTCCCTCGCCGTGGAGCCGGGGCACACCGTCGCCAT
CGTCGGCCCGACGGGCGCCGGAAAGACGACGCTGGTCAACCTGCTGCTCCGCTTCTACGAGGTCACCGGCGGGCGCATCA
CCCTCGACGGGGTCGACGTGGCGAAGATGTCGCGCGACGAACTCCGTTCCGGGATCGGCATGGTCCTCCAGGACACGTGG
CTGTTCGGCGGCACGATCGCGGACAACATCGCGTACGGCGCGGCGAAGGACGTCACCCGGGAGCAGATCGAGGAAGCGGC
GCGGGCCGCCCACGCGGACCGGTTCATCCGGACGCTGCCCGAGGGCTACGACACCGTGATCGACGACGAGGGGTCGGGGG
TCAGCGCCGGTGAGAAGCAGCTCATCACCATCGCGCGCGCGTTCCTCTCGGACCCGGTGATACTCGTCCTCGACGAGGCG
ACGAGCTCCGTCGACACCCGTACCGAGGTGCTCATCCAGAAGGCGATGGCGCGGCTCGCCCACGGGCGGACCAGCTTCGT
CATCGCTCACCGGCTGTCCACGATCCGCGACGCCGACACCATCCTGGTGATGGAGAGCGGGGACATCGTGGAGCAGGGCA
CCCACGACGCGCTGCGCGCCGCGGGCGGGGCGTACGAGCGGCTGTACGAGGCTCAGTTCGCGCAGGCCGTGGCGGAGGTG
GAGTAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(413-562)

ABC transporter transmembrane region (ABC_membrane)

(41-350)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

41.195

96.568

0.398