Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OHB42_RS14330 Genome accession   NZ_CP108181
Coordinates   3194385..3195170 (+) Length   261 a.a.
NCBI ID   WP_100591111.1    Uniprot ID   A0ABV4SX88
Organism   Streptomyces sp. NBC_00134     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3189385..3200170
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHB42_RS14315 (OHB42_14310) - 3189682..3190209 (+) 528 WP_266674896.1 TerD family protein -
  OHB42_RS14320 (OHB42_14315) - 3190287..3193187 (-) 2901 WP_266674895.1 vitamin B12-dependent ribonucleotide reductase -
  OHB42_RS14325 (OHB42_14320) nrdR 3193324..3193869 (-) 546 WP_266674894.1 transcriptional regulator NrdR -
  OHB42_RS14330 (OHB42_14325) dinR/lexA 3194385..3195170 (+) 786 WP_100591111.1 transcriptional repressor LexA Regulator
  OHB42_RS14335 (OHB42_14330) - 3195317..3197299 (-) 1983 WP_266674893.1 ATP-dependent DNA helicase -
  OHB42_RS14340 (OHB42_14335) - 3197340..3199295 (-) 1956 WP_406517516.1 IucA/IucC family protein -

Sequence

Protein


Download         Length: 261 a.a.        Molecular weight: 28153.94 Da        Isoelectric Point: 7.4237

>NTDB_id=655608 OHB42_RS14330 WP_100591111.1 3194385..3195170(+) (dinR/lexA) [Streptomyces sp. NBC_00134]
MTTTADSATITAQDRSQGRLEPVHAMNDASMSAEGPKPARSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPPSM
REIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSAQPTDTAGKPAASYVPLVGRIAAGGPILAEESV
EDVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLEGEATVKRFKREDGHVWLLPHNSAY
QPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 786 bp        

>NTDB_id=655608 OHB42_RS14330 WP_100591111.1 3194385..3195170(+) (dinR/lexA) [Streptomyces sp. NBC_00134]
GTGACCACCACCGCAGACAGCGCCACCATCACTGCCCAGGACCGTTCCCAGGGCCGACTCGAGCCGGTGCATGCCATGAA
TGACGCATCCATGAGCGCGGAGGGGCCGAAGCCCGCGCGCTCCCTGCCGGGCCGACCTCCCGGCATCCGGGCGGACAGCT
CGGGGCTCACGGACAGGCAGCGGCGCGTCATCGAGGTGATCAGGGACTCCGTGCAGCGGCGTGGTTACCCGCCGTCGATG
CGGGAGATCGGCCAGGCGGTGGGCCTGTCGAGCACGTCGTCGGTCGCGCACCAGCTGATGGCCCTCGAGCGCAAGGGTTT
CCTGCGCCGGGACCCGCACCGCCCCCGCGCCTACGAGGTCCGTGGCTCCGACCAGCCGAGCGCGCAGCCCACGGACACCG
CGGGCAAGCCGGCCGCGTCGTACGTCCCGCTCGTCGGCCGCATCGCCGCCGGTGGCCCGATCCTCGCGGAAGAGTCCGTC
GAGGACGTGTTCCCTCTCCCCCGGCAGCTGGTCGGTGACGGCGAGCTGTTCGTCCTGAAGGTCGTCGGTGACTCGATGAT
CGAGGCCGCGATCTGTGACGGCGACTGGGTCACGGTCCGCCGCCAGCCGGTCGCGGAGAACGGCGACATCGTCGCCGCGA
TGCTCGAGGGCGAGGCCACCGTCAAGCGTTTCAAGCGCGAGGACGGCCATGTGTGGCTGCTGCCGCACAACTCCGCGTAC
CAGCCGATCCCCGGTGACGAGGCGACGATCCTCGGCAAGGTGGTGGCCGTTCTGCGGCGGGTGTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(54-117)

Peptidase S24-like (Peptidase_S24)

(143-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.226

81.226

0.375