Detailed information NTG0655573

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: OG565_RS21230
• Genome accession: NZ_CP108177
• Coordinates: 4917768..4918763 (+)
• Length: 331 a.a.
• NCBI ID: WP_328913924.1
• Uniprot ID: -
• Organism: Streptomyces sp. NBC_00138
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4912768..4923763

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OG565_RS21205 (OG565_21240)	-	4912867..4913523 (+)	657	WP_328913929.1	TetR/AcrR family transcriptional regulator	-
OG565_RS21210 (OG565_21245)	-	4913797..4915305 (+)	1509	WP_328913928.1	MFS transporter	-
OG565_RS21215 (OG565_21250)	-	4915499..4916137 (-)	639	WP_328913927.1	hypothetical protein	-
OG565_RS21220 (OG565_21255)	-	4916157..4916942 (-)	786	WP_328913926.1	class III extradiol ring-cleavage dioxygenase	-
OG565_RS21225 (OG565_21260)	-	4917049..4917558 (-)	510	WP_328913925.1	N-acetyltransferase family protein	-
OG565_RS21230 (OG565_21265)	rpoS	4917768..4918763 (+)	996	WP_328913924.1	sigma-70 family RNA polymerase sigma factor	Regulator
OG565_RS21235 (OG565_21270)	-	4918869..4919636 (+)	768	WP_328913923.1	VIT family protein	-
OG565_RS21240 (OG565_21275)	-	4919663..4920823 (-)	1161	WP_328917844.1	low temperature requirement protein A	-
OG565_RS21245 (OG565_21280)	-	4920973..4922136 (-)	1164	WP_328913922.1	PLP-dependent cysteine synthase family protein	-
OG565_RS21250 (OG565_21285)	-	4922250..4922528 (+)	279	WP_405785599.1	hypothetical protein	-
OG565_RS21255 (OG565_21290)	-	4922653..4922955 (-)	303	WP_328913920.1	hypothetical protein	-

Sequence

Protein

• Length: 331 a.a.
• Molecular weight: 36469.11 Da
• Isoelectric Point: 5.0415

>NTDB_id=655573 OG565_RS21230 WP_328913924.1 4917768..4918763(+) (rpoS) [Streptomyces sp. NBC_00138]
MATRAVARRNAGGTSSARAAGGEVADRDLVGMYLDEIARTPLLDAAREVELSRDIEAGVYAERILAADTGLPAGAGADAK
REELEAIVGAGERAKDIFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYAKGFKFSTYATWWIRQAITR
SIADQSRTIRLPVHLVEELGRIRRVQREFNREHGRDAEPAEIAAELDSTAGRIADVLDWARDPVSLNMSVDAEGETEFGD
LVEDGAAPSPEDSVLVMLRREELDGLIDRLDDRTASIIRARYGIVDGRERTLTEVGKEHGLTRERIRQIEKHALADLKRM
ARATGLDYEAA

Nucleotide

• Length: 996 bp

>NTDB_id=655573 OG565_RS21230 WP_328913924.1 4917768..4918763(+) (rpoS) [Streptomyces sp. NBC_00138]
ATGGCAACCCGTGCCGTCGCCCGTCGTAACGCAGGCGGGACCAGCAGCGCTCGCGCCGCAGGCGGGGAAGTCGCCGACCG
CGACCTCGTCGGCATGTACCTGGACGAGATCGCGCGCACCCCGCTGCTCGACGCCGCCCGGGAGGTCGAGCTGTCCCGGG
ACATCGAAGCGGGCGTCTACGCAGAGCGCATACTCGCCGCTGACACCGGTCTGCCCGCCGGAGCGGGCGCCGACGCCAAG
CGCGAGGAGCTCGAAGCGATCGTCGGCGCAGGTGAGCGCGCCAAGGACATCTTCATCCGCTCCAACCTCCGCCTCGTCGT
CGCGGTCGCCCGCCGCTACCCGCGCAGCGGACTGCCGCTGCTCGACCTGATCCAGGAGGGGAACGCGGGCCTGGTCCGCG
CCGTCGAGAAGTTCGACTACGCCAAGGGCTTCAAGTTCTCCACCTACGCGACCTGGTGGATCCGGCAGGCCATCACCCGT
TCCATCGCCGACCAGTCCCGTACGATCCGGCTGCCCGTGCACCTGGTCGAGGAGCTGGGCCGTATCCGGCGCGTGCAGCG
CGAGTTCAACCGCGAGCACGGCCGTGACGCGGAGCCCGCGGAGATCGCCGCGGAGCTGGACTCCACCGCGGGGCGCATCG
CCGACGTCCTGGACTGGGCCCGCGACCCGGTGTCCCTCAACATGTCGGTGGACGCCGAGGGCGAGACCGAGTTCGGCGAC
CTCGTCGAGGACGGCGCGGCTCCCTCCCCGGAGGACTCCGTGCTGGTCATGCTGCGCCGCGAAGAGCTGGACGGCCTGAT
CGACCGGCTCGACGACCGGACCGCCTCCATCATCCGCGCCCGGTACGGCATCGTGGACGGCCGTGAACGCACTCTCACCG
AGGTCGGCAAGGAACACGGCCTCACCCGCGAGCGCATCCGCCAGATCGAGAAGCACGCACTCGCCGATCTCAAGCGGATG
GCGCGCGCGACCGGACTGGACTACGAAGCCGCGTAG

Domains

Predicted by InterProScan.

• Sigma-70, region 4 (Sigma70_r4) (267-318)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (28-61)

• Sigma-70 region 2 (Sigma70_r2) (98-167)

• Sigma-70 region 3 (Sigma70_r3) (177-253)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	39.604	91.541	0.363