Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   OG565_RS06950 Genome accession   NZ_CP108177
Coordinates   1666097..1667305 (-) Length   402 a.a.
NCBI ID   WP_328916458.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00138     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1661097..1672305
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG565_RS06930 (OG565_06960) - 1661568..1661906 (-) 339 WP_328916461.1 P-II family nitrogen regulator -
  OG565_RS06935 (OG565_06965) - 1661903..1663249 (-) 1347 WP_328916460.1 ammonium transporter -
  OG565_RS06940 (OG565_06970) - 1663506..1664933 (-) 1428 WP_328918011.1 hypothetical protein -
  OG565_RS06945 (OG565_06975) - 1665313..1666026 (+) 714 WP_328916459.1 bifunctional DNA primase/polymerase -
  OG565_RS06950 (OG565_06980) pilA 1666097..1667305 (-) 1209 WP_328916458.1 signal recognition particle-docking protein FtsY Machinery gene
  OG565_RS06955 (OG565_06985) - 1667405..1668820 (-) 1416 WP_328916457.1 sugar porter family MFS transporter -

Sequence

Protein


Download         Length: 402 a.a.        Molecular weight: 42669.76 Da        Isoelectric Point: 4.6161

>NTDB_id=655545 OG565_RS06950 WP_328916458.1 1666097..1667305(-) (pilA) [Streptomyces sp. NBC_00138]
MEIVILVVVIALVVVLGAGGLVVGSRRRKKQLPPSPPSPPTITTPPAEPHVGDEAETPREEPRRTIEEVPLPGATAAPEA
VEEVPVPPAPEIERPEPTAGRLVRLRSRLSRSQNSLGKGLLTLLSRERLDEETWEEIEDTLITADVGVAPTQELVERLRT
RVRVLGTRTPDDLRQLLREELIALVDPTLDRTLRTESHEDSPAVLLVVGVNGTGKTTTTGKLARVLVADGHSVVLGAADT
FRAAAADQLQTWGERVGARTVRGPEGGDPASVAFDAVKEGIAESADTVLIDTAGRLHTKTGLMDELGKVKRVVEKHGPVD
EVLLVLDATTGQNGLVQARVFAEVVDITGIVLTKLDGTAKGGIVVAVQRELGVPVKLIGLGEGADDLAPFEPEAFVDALI
GE

Nucleotide


Download         Length: 1209 bp        

>NTDB_id=655545 OG565_RS06950 WP_328916458.1 1666097..1667305(-) (pilA) [Streptomyces sp. NBC_00138]
ATGGAAATCGTCATCCTAGTCGTCGTCATCGCTCTGGTCGTGGTCCTCGGGGCCGGCGGGCTGGTGGTGGGCAGCCGCCG
CAGGAAAAAGCAGCTGCCGCCCTCGCCGCCGAGCCCCCCGACGATCACCACGCCTCCCGCCGAACCGCACGTCGGGGACG
AGGCCGAGACCCCGCGGGAGGAACCCCGCCGGACCATCGAGGAGGTTCCGCTCCCCGGCGCCACCGCCGCGCCCGAGGCC
GTCGAGGAGGTGCCGGTCCCGCCCGCGCCGGAGATCGAGCGGCCGGAACCGACCGCCGGCCGCCTCGTACGGCTGCGCTC
CCGTCTGTCCCGCTCGCAGAACTCGCTGGGCAAGGGCCTGCTCACCCTGCTCTCCCGGGAACGCCTCGACGAGGAGACGT
GGGAGGAGATCGAGGACACCCTGATCACCGCCGACGTCGGTGTCGCCCCCACCCAGGAGCTGGTCGAGCGGCTGCGCACC
CGGGTACGGGTGCTCGGCACCCGGACCCCGGACGATCTGCGCCAACTGCTCCGCGAGGAACTGATCGCCCTGGTCGACCC
CACGCTCGACCGCACCCTGCGCACCGAGAGCCACGAGGACTCCCCGGCCGTGCTGCTGGTCGTCGGCGTCAACGGCACCG
GCAAGACCACCACCACCGGCAAGCTCGCCCGGGTGCTCGTCGCCGACGGGCACAGCGTCGTACTCGGCGCGGCCGACACC
TTCCGCGCCGCCGCGGCCGACCAGTTGCAGACGTGGGGCGAGCGGGTCGGGGCGCGTACGGTACGCGGGCCCGAGGGCGG
CGATCCCGCGTCGGTGGCCTTCGACGCGGTCAAGGAGGGCATCGCGGAGAGCGCCGACACCGTGCTCATCGACACCGCGG
GCCGGCTGCACACCAAGACCGGCCTGATGGACGAGCTGGGCAAGGTCAAGCGGGTCGTGGAGAAGCACGGGCCGGTGGAC
GAGGTGCTGCTCGTGCTCGACGCCACCACCGGGCAGAACGGCCTGGTCCAGGCACGGGTCTTCGCCGAGGTCGTGGACAT
CACCGGCATCGTCCTGACCAAGCTCGACGGCACGGCGAAGGGCGGCATCGTGGTGGCCGTCCAGCGTGAACTCGGTGTGC
CGGTCAAGCTCATCGGCCTCGGCGAGGGCGCGGACGACCTGGCCCCCTTCGAGCCCGAGGCGTTCGTGGACGCCCTCATC
GGGGAGTAG

Domains

Predicted by InterProScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(116-181)

SRP54-type protein, GTPase domain (SRP54)

(202-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

41.808

88.06

0.368