Detailed information    

insolico Bioinformatically predicted

Overview


Name   lqsT   Type   Regulator
Locus tag   MBG98_RS12785 Genome accession   NZ_CP092038
Coordinates   2844245..2845513 (+) Length   422 a.a.
NCBI ID   WP_338018494.1    Uniprot ID   -
Organism   Legionella pneumophila strain 11052018-5     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context


Location: 2839245..2850513
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MBG98_RS12775 (MBG98_12775) mesI 2841549..2842436 (+) 888 WP_010948207.1 Dot/Icm T4SS metaeffector MesI -
  MBG98_RS12780 (MBG98_12780) - 2842975..2844246 (-) 1272 WP_042237775.1 IS256 family transposase -
  MBG98_RS12785 (MBG98_12785) lqsT 2844245..2845513 (+) 1269 WP_338018494.1 HAMP domain-containing sensor histidine kinase Regulator
  MBG98_RS12790 (MBG98_12790) - 2845561..2846256 (-) 696 WP_010948209.1 iron-containing redox enzyme family protein -
  MBG98_RS12795 (MBG98_12795) sdjA 2846655..2849078 (-) 2424 WP_010948210.1 Dot/Icm T4SS effector SdjA -
  MBG98_RS12800 (MBG98_12800) dupB 2849149..2850342 (-) 1194 WP_010948211.1 Dot/Icm T4SS effector deubiquitinase DupB/LaiF -

Sequence


Protein


Download         Length: 422 a.a.        Molecular weight: 48824.34 Da        Isoelectric Point: 7.7013

>NTDB_id=655310 MBG98_RS12785 WP_338018494.1 2844245..2845513(+) (lqsT) [Legionella pneumophila strain 11052018-5]
MVYLLFIDCLDTIRIHHLIFSNLPSHTQNSIIALMMINYPLFGVFWKLEHFQLTEEFILRITAALLCACLAFNQFWPRQL
LKFLPVFWYIVLLFCLPYFFAYLTLINNGSTLWLMNCVSAIFFLLLVSSVLGALILLISGVGLAFFHFYILSNNQFVYIP
GTISLFSLIVTFIAAIIIGALFARDREITYAGRLSGMRMLAGSIAHDLRTPLASIYLQAELQELIVERLNNPEVQKDLKE
NLSKITRGIEMSNQLIRMQLNNIQRDKLDTSTFSIYSIKKLLKASLEEYPFKENQKSLIHLNDKNDFSIWIDEVGFKNMM
WNLLKNSLEYIEETHKGEISIWLEQGWEKENFNYLHIKDTAKGLNHKEYEKIFDFFYSGRKEGTGLGLAYCKLLMQAAGG
DISCKGKKNEFAHFTLKFPKID

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=655310 MBG98_RS12785 WP_338018494.1 2844245..2845513(+) (lqsT) [Legionella pneumophila strain 11052018-5]
ATGGTGTATCTCCTTTTTATTGATTGCTTAGACACAATCAGGATACACCACTTAATTTTTTCTAATCTACCCAGTCATAC
ACAAAATTCAATCATAGCTCTCATGATGATTAATTACCCTCTTTTCGGAGTTTTCTGGAAACTGGAGCATTTTCAACTGA
CAGAAGAATTTATTTTACGCATCACTGCAGCCCTCCTCTGTGCCTGTTTGGCATTTAATCAATTTTGGCCAAGACAATTA
TTAAAATTTCTACCTGTTTTTTGGTATATAGTTCTTCTCTTTTGTTTGCCTTACTTTTTTGCTTATTTGACTCTCATAAA
CAATGGCTCGACTCTTTGGCTAATGAATTGCGTATCCGCTATCTTTTTTCTTTTATTAGTTTCCAGTGTATTGGGGGCTC
TTATATTACTTATATCAGGTGTTGGACTTGCTTTTTTTCATTTTTATATTTTATCAAATAATCAGTTTGTCTATATCCCA
GGAACCATATCACTTTTTAGTTTAATTGTTACGTTTATTGCAGCAATAATCATTGGTGCCTTGTTTGCACGAGATAGAGA
AATTACCTATGCCGGACGTTTATCGGGTATGCGCATGCTGGCTGGAAGTATCGCTCATGATTTAAGAACGCCGCTTGCCA
GTATTTATTTACAAGCCGAATTACAGGAATTGATTGTCGAAAGATTAAATAATCCAGAAGTTCAAAAGGACCTGAAGGAA
AATTTAAGCAAAATTACTCGCGGCATAGAAATGAGTAATCAATTAATTCGTATGCAATTAAATAATATTCAACGAGACAA
ATTAGATACCAGTACATTTTCGATTTATTCCATCAAAAAATTGCTCAAGGCGTCTTTAGAAGAATACCCTTTCAAAGAAA
ATCAAAAATCATTGATTCATTTAAATGATAAAAATGATTTTTCCATATGGATTGATGAAGTGGGTTTTAAAAATATGATG
TGGAATTTGCTAAAAAATAGTCTGGAATATATTGAGGAAACCCATAAAGGCGAAATCTCTATCTGGCTAGAACAAGGATG
GGAGAAAGAGAATTTTAATTACCTCCATATAAAAGATACAGCTAAAGGTTTAAATCATAAAGAATATGAAAAAATATTTG
ATTTCTTCTATTCTGGCAGAAAAGAAGGAACTGGTTTAGGCTTGGCCTATTGTAAACTTCTGATGCAAGCAGCAGGCGGT
GATATTTCCTGTAAAGGGAAAAAAAATGAATTCGCTCATTTCACTTTAAAATTCCCCAAAATTGATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lqsT Legionella pneumophila subsp. pneumophila str. Philadelphia 1

97.99

94.313

0.924