Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimT   Type   Machinery gene
Locus tag   MBG98_RS03370 Genome accession   NZ_CP092038
Coordinates   709732..710439 (-) Length   235 a.a.
NCBI ID   WP_014843471.1    Uniprot ID   -
Organism   Legionella pneumophila strain 11052018-5     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 704732..715439
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MBG98_RS03355 (MBG98_03355) - 707608..708120 (-) 513 WP_014843468.1 pilus assembly PilX family protein -
  MBG98_RS03360 (MBG98_03360) - 708117..709184 (-) 1068 WP_014843469.1 PilW family protein -
  MBG98_RS03365 (MBG98_03365) pilV 709181..709720 (-) 540 WP_027224585.1 type IV pilus modification protein PilV -
  MBG98_RS03370 (MBG98_03370) fimT 709732..710439 (-) 708 WP_014843471.1 GspH/FimT family pseudopilin Machinery gene
  MBG98_RS03375 (MBG98_03375) - 710659..711519 (-) 861 WP_027224587.1 polysaccharide deacetylase family protein -
  MBG98_RS03380 (MBG98_03380) - 711696..713045 (-) 1350 WP_080031323.1 lpg0634 family Dot/Icm T4SS effector -
  MBG98_RS03385 (MBG98_03385) - 713333..714814 (+) 1482 WP_061475252.1 ArnT family glycosyltransferase -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 24934.66 Da        Isoelectric Point: 8.2443

>NTDB_id=655281 MBG98_RS03370 WP_014843471.1 709732..710439(-) (fimT) [Legionella pneumophila strain 11052018-5]
MNKVITESQKLTLRNLANMLFCVESSVLPTKSNIAQKIQTKGIMYNNLCKDSFDTEVPLNSNPLSIAGFTLVELLVTLSV
FAIILTLIVPSLRTMILNNRLTSNIDSLVSSLNYARGVALDRAVNVAVCPLGSPGSTACGTNWSSGWIVVTQPVAGAPTL
LKSHQTSVNDPVITSNVSSVVFDPHGLSTTQSNFTMCDNRGNAFARSAMVLATGFVQSGSTPGQAVWNNGALNCP

Nucleotide


Download         Length: 708 bp        

>NTDB_id=655281 MBG98_RS03370 WP_014843471.1 709732..710439(-) (fimT) [Legionella pneumophila strain 11052018-5]
TTGAACAAAGTGATAACGGAATCACAAAAGCTCACTCTACGCAACTTAGCTAATATGTTATTTTGCGTTGAGAGTAGTGT
ATTGCCTACTAAATCTAATATAGCACAAAAGATACAAACAAAAGGCATAATGTACAATAATCTTTGTAAAGACAGCTTCG
ATACTGAGGTCCCTCTTAACAGCAACCCTCTTTCCATAGCCGGATTCACACTGGTTGAATTATTAGTAACCCTATCTGTT
TTTGCTATCATCTTAACTCTAATCGTCCCTTCATTAAGAACTATGATTTTGAATAACCGTTTGACTTCAAACATTGACTC
ACTGGTAAGCTCATTAAACTATGCGCGTGGAGTGGCACTTGATCGGGCAGTCAATGTGGCAGTATGTCCATTAGGTTCAC
CAGGTTCAACGGCCTGTGGAACCAACTGGAGCTCAGGATGGATAGTAGTGACCCAACCAGTAGCAGGAGCACCAACGCTT
TTAAAATCGCACCAGACCTCAGTGAATGATCCTGTTATCACTTCGAACGTATCCAGTGTTGTTTTTGACCCACATGGGTT
ATCAACAACCCAAAGTAACTTCACTATGTGTGATAACAGAGGAAATGCATTTGCCCGCTCGGCAATGGTTTTGGCCACCG
GATTTGTCCAATCCGGATCAACACCCGGCCAAGCAGTCTGGAATAATGGAGCTCTGAACTGCCCTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(106-208)

Prokaryotic N-terminal methylation motif (N_methyl)

(67-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimT Legionella pneumophila strain Lp02

95.745

100

0.957