Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG915_RS30455 Genome accession   NZ_CP108165
Coordinates   6883023..6884756 (-) Length   577 a.a.
NCBI ID   WP_326787973.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00151     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 6878023..6889756
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG915_RS30445 (OG915_30475) - 6879646..6880954 (+) 1309 Protein_6012 RNA polymerase sigma factor -
  OG915_RS30450 (OG915_30480) rcrQ 6881095..6883023 (-) 1929 WP_326787972.1 ABC transporter ATP-binding protein Regulator
  OG915_RS30455 (OG915_30485) rcrP 6883023..6884756 (-) 1734 WP_326787973.1 ABC transporter ATP-binding protein Regulator
  OG915_RS30460 (OG915_30490) - 6884926..6886380 (-) 1455 WP_326787974.1 FGGY family carbohydrate kinase -
  OG915_RS30465 (OG915_30495) - 6886541..6886846 (-) 306 WP_326787975.1 YtxH domain-containing protein -
  OG915_RS30485 (OG915_30515) - 6888108..6889199 (+) 1092 WP_326787976.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62777.04 Da        Isoelectric Point: 6.0762

>NTDB_id=655247 OG915_RS30455 WP_326787973.1 6883023..6884756(-) (rcrP) [Streptomyces sp. NBC_00151]
MLIRLLRTHLSPYKKPIALLVLLQFLQTCATLYLPTLNAHIIDNGVVKGDTGYILTFGALMVGISLTQVVCNIGAVYYGA
RTASAVGRDIRGAVFDRVQSFSAREMGHFGAPSLITRTTNDVQQVQMLALMTFTLLVSAPIMCVGGIILALGLDVPLSAV
LVAVVPTLGICVTLIVRRLRPLFRTMQVRLDTVNRVLREQITGNRVIRAFVRDGYEKDRFKGANTDLTETSLATGRMLAL
MFPIVMTVVNLSSIAVVWFGAHRIDSGEMQIGDLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLGTESSVVP
PVAPVLELRRHGHLEIREAGFRYPGAEEPVLRSVDLVARPGEVTAVIGSTGSGKSTLLGMIPRLFDATDGQVLVDGVDVA
TIEPKLLARTVGLVPQKPYLFAGTVATNLRYGNPEATDEELWHALEVAQAKGFVEQLENGLDSPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALTEETAEATVVIVAQRVSTIREADRIVVLDEGRVVGTGRHHELMADN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=655247 OG915_RS30455 WP_326787973.1 6883023..6884756(-) (rcrP) [Streptomyces sp. NBC_00151]
GTGCTCATACGACTCCTGCGGACCCACCTCAGTCCGTACAAGAAACCCATCGCCCTGCTGGTGCTGCTGCAGTTCCTGCA
GACCTGCGCCACCCTCTACCTGCCCACCCTCAACGCGCACATCATCGACAACGGTGTCGTGAAGGGTGACACGGGTTACA
TCCTGACCTTCGGCGCCCTGATGGTCGGCATCTCGCTGACCCAGGTCGTCTGCAACATCGGGGCCGTCTACTACGGAGCC
CGTACGGCGTCCGCGGTGGGCCGGGACATCCGGGGCGCCGTCTTCGACCGCGTGCAGTCGTTCTCGGCACGCGAGATGGG
CCATTTCGGCGCGCCGTCGCTGATCACCCGCACCACCAACGACGTCCAGCAGGTGCAGATGCTCGCGCTGATGACGTTCA
CCCTGCTGGTGTCGGCGCCGATCATGTGTGTGGGCGGCATCATCCTGGCCCTCGGCCTGGACGTGCCGCTGTCCGCGGTG
CTCGTCGCCGTGGTGCCGACGCTCGGCATCTGCGTGACGCTCATCGTGCGCCGGCTGCGCCCGCTGTTCCGCACCATGCA
GGTGCGCCTGGACACCGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGCGTGATCCGCGCGTTCGTGCGCGACG
GCTACGAGAAGGACCGTTTCAAGGGCGCCAACACCGACCTCACCGAGACGTCGCTGGCCACCGGCCGGATGCTGGCCCTG
ATGTTCCCGATCGTCATGACGGTGGTGAACCTGTCGTCCATCGCGGTCGTCTGGTTCGGCGCCCACCGCATCGACAGCGG
CGAGATGCAGATCGGCGATCTGACCGCGTTCCTGGCCTATCTGATGCAGATCGTGATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCGGAGGTCTGCGCGGAGCGCATCCAGGAGGTCCTGGGCACCGAGAGCAGCGTGGTCCCG
CCCGTCGCGCCCGTCCTGGAGCTGCGCCGGCACGGCCACCTGGAGATCCGCGAGGCCGGGTTCCGCTACCCGGGCGCCGA
GGAGCCGGTCCTGAGGTCCGTCGACCTGGTCGCGCGGCCCGGTGAGGTCACCGCGGTCATCGGTTCGACGGGCAGCGGCA
AGTCGACGCTGCTCGGCATGATCCCCCGCCTGTTCGACGCCACCGACGGCCAGGTGCTCGTCGACGGCGTGGACGTCGCG
ACCATCGAGCCGAAGCTGCTGGCCAGGACGGTCGGACTGGTCCCCCAGAAGCCCTACCTGTTCGCGGGGACGGTCGCCAC
GAACCTGCGGTACGGCAACCCGGAGGCGACCGACGAGGAGCTGTGGCACGCGCTGGAGGTGGCGCAGGCCAAGGGCTTCG
TGGAACAGCTCGAGAACGGGCTGGACTCGCCGATCGCGCAGGGCGGCACGAACGTGTCCGGCGGCCAGCGCCAGCGCCTG
GCGATCGCCCGCACCCTCGTGCAGCGCCCCGAGATCTACCTGTTCGACGACTCCTTCTCGGCCCTCGACTACGCGACCGA
CGCGGCGCTGCGCGCGGCGCTCACCGAGGAGACCGCCGAGGCGACCGTGGTGATCGTGGCCCAGCGGGTGTCGACCATCA
GGGAGGCCGACCGGATCGTGGTCCTCGACGAGGGCCGGGTCGTCGGCACCGGACGCCACCACGAACTGATGGCGGACAAC
GAGACCTATCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCCGCCTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(18-288)

ABC transporter (ABC_tran)

(352-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.175

100

0.395