Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OG915_RS30450 Genome accession   NZ_CP108165
Coordinates   6881095..6883023 (-) Length   642 a.a.
NCBI ID   WP_326787972.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00151     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 6876095..6888023
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG915_RS30435 (OG915_30465) - 6876104..6877369 (+) 1266 WP_326787970.1 FAD-dependent oxidoreductase -
  OG915_RS30440 (OG915_30470) dnaG 6877515..6879419 (+) 1905 WP_326787971.1 DNA primase -
  OG915_RS30445 (OG915_30475) - 6879646..6880954 (+) 1309 Protein_6012 RNA polymerase sigma factor -
  OG915_RS30450 (OG915_30480) rcrQ 6881095..6883023 (-) 1929 WP_326787972.1 ABC transporter ATP-binding protein Regulator
  OG915_RS30455 (OG915_30485) rcrP 6883023..6884756 (-) 1734 WP_326787973.1 ABC transporter ATP-binding protein Regulator
  OG915_RS30460 (OG915_30490) - 6884926..6886380 (-) 1455 WP_326787974.1 FGGY family carbohydrate kinase -
  OG915_RS30465 (OG915_30495) - 6886541..6886846 (-) 306 WP_326787975.1 YtxH domain-containing protein -

Sequence

Protein


Download         Length: 642 a.a.        Molecular weight: 69526.95 Da        Isoelectric Point: 6.5889

>NTDB_id=655246 OG915_RS30450 WP_326787972.1 6881095..6883023(-) (rcrQ) [Streptomyces sp. NBC_00151]
MAGPMGRMMAGGGPDQRSMDFKVSGRRLLTQFKPERATLYVMLVAVVLSVGLSVVGPKILGRATDLVFAGIVGRQMPAGT
TKAQALDSLRAHGKGAVADMLSGTDFTPGQGIDFTAVGHVLLFALGTFLLAGLLMAVATRLVNRAVNKTVYRMREDLQAK
LSRLPLSYFDKRQRGEVLSRATNDMDNIQQTLQQSMGQLVNSLLTIVGVLAMMFWVSPLLALVALVTVPLSFVVATRVGK
RSQPHFVQQWRTTGKLNAHIEEMYTGHNLVKVFGRAEESAAQFAEQNDKLYEAGFKAQFNSGVMQPLMMFVSNLNYVLVA
VVGGLRVASGSLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERVFEVLDADEQEADPKVSARPEELRGRVALE
HVSFRYDPEKPLIEDLSLKVEPGHTVAIVGPTGAGKTTLVNLLMRFYDVTGGRITLDGVDVTSMSRDDLRSRIGMVLQDT
WLFGGTIADNIAYGASRDVTRGEIEEAARAAHADRFIRTLPQGYDTVIDDEGTGVSAGEKQLITIARAFLSDPVILVLDE
ATSSVDTRTEVLIQKAMAKLAHGRTSFVIAHRLSTIRDADTILVMEDGAIVEQGTHADLLESGGAYARLYQAQFAQAVAE
VD

Nucleotide


Download         Length: 1929 bp        

>NTDB_id=655246 OG915_RS30450 WP_326787972.1 6881095..6883023(-) (rcrQ) [Streptomyces sp. NBC_00151]
ATGGCCGGGCCGATGGGGCGCATGATGGCCGGGGGCGGCCCTGACCAGCGCTCGATGGATTTCAAGGTGTCGGGCCGACG
GCTCCTCACCCAGTTCAAGCCCGAGCGCGCCACGCTGTACGTGATGCTCGTCGCCGTCGTGCTGAGCGTCGGGCTCTCGG
TGGTCGGCCCGAAGATCCTCGGCCGGGCCACCGACCTGGTCTTCGCGGGGATCGTCGGCCGCCAGATGCCGGCCGGGACC
ACCAAGGCCCAGGCTCTCGACTCGCTGCGCGCGCACGGCAAGGGTGCCGTCGCCGACATGCTCTCGGGGACGGACTTCAC
CCCCGGCCAGGGCATCGACTTCACCGCCGTCGGGCACGTCCTGCTGTTCGCGCTCGGCACGTTCCTGCTGGCCGGACTGC
TGATGGCGGTGGCCACGCGGCTCGTGAACCGGGCCGTCAACAAGACGGTCTACCGCATGCGCGAGGACCTCCAGGCGAAG
CTGTCGCGGCTGCCGCTGTCGTACTTCGACAAGCGCCAGCGCGGTGAGGTGCTCAGCCGCGCGACGAACGACATGGACAA
CATCCAGCAGACCCTCCAGCAGTCGATGGGCCAGCTCGTCAACTCGCTGCTGACCATCGTGGGTGTCCTCGCGATGATGT
TCTGGGTGTCGCCGCTGCTGGCGCTCGTCGCGCTGGTCACGGTGCCGCTGTCGTTCGTCGTGGCCACCCGGGTCGGCAAG
CGCTCGCAGCCGCACTTCGTGCAGCAGTGGCGCACCACCGGCAAGCTCAACGCCCACATCGAGGAGATGTACACCGGCCA
CAACCTGGTGAAGGTGTTCGGGCGGGCGGAGGAGTCGGCGGCGCAGTTCGCCGAGCAGAACGACAAGCTGTACGAGGCCG
GGTTCAAGGCGCAGTTCAACAGCGGCGTCATGCAGCCGCTGATGATGTTCGTGTCGAACCTGAACTATGTGCTGGTGGCC
GTCGTCGGCGGTCTGCGGGTGGCCTCGGGCTCGCTGTCGATCGGTGACGTGCAGGCCTTCATCCAGTACTCCCGCCAGTT
CTCGATGCCGCTGACGCAGGTCGCGTCGATGGCGAACCTGGTGCAGTCGGGTGTCGCGTCGGCGGAGCGGGTCTTCGAGG
TCCTGGACGCGGACGAGCAGGAGGCGGACCCGAAGGTGTCGGCCCGTCCCGAGGAGCTGCGCGGGCGCGTGGCGCTGGAG
CACGTCTCCTTCCGGTACGACCCGGAGAAGCCGCTCATCGAGGACCTCTCCCTGAAGGTGGAGCCGGGCCACACCGTGGC
CATCGTCGGCCCGACCGGCGCCGGCAAGACGACCCTGGTGAACCTGCTCATGCGGTTCTACGACGTCACGGGCGGCCGCA
TCACCCTCGACGGGGTCGATGTGACCTCCATGTCCCGGGACGACCTGAGGTCGAGGATCGGCATGGTGCTCCAGGACACC
TGGCTGTTCGGGGGCACGATCGCCGACAACATCGCGTACGGGGCCTCGCGGGACGTCACCCGCGGGGAGATCGAGGAGGC
GGCGCGCGCGGCGCACGCCGACCGGTTCATCCGCACGCTGCCCCAGGGCTACGACACGGTGATCGACGACGAGGGGACGG
GGGTCAGCGCGGGCGAGAAGCAGCTGATCACCATCGCCCGCGCGTTCCTGTCGGACCCGGTGATCCTGGTGCTCGACGAG
GCGACCAGTTCCGTCGACACCCGCACCGAGGTGCTGATCCAGAAGGCGATGGCGAAGCTGGCGCACGGGCGGACGTCGTT
CGTGATCGCCCACCGTCTGTCGACCATCCGGGACGCGGACACGATCCTCGTGATGGAGGACGGCGCCATCGTGGAGCAGG
GCACCCACGCGGACCTGCTGGAGTCCGGCGGCGCCTACGCCCGCCTCTACCAGGCCCAGTTCGCCCAGGCGGTGGCCGAG
GTCGACTAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(41-351)

ABC transporter (ABC_tran)

(414-563)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

40.388

96.417

0.389