Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   MA853_RS07700 Genome accession   NZ_CP092026
Coordinates   1489789..1490100 (-) Length   103 a.a.
NCBI ID   WP_002779316.1    Uniprot ID   A0A3K5JRX6
Organism   Campylobacter coli strain 14240-1     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1484789..1495100
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MA853_RS07680 (MA853_07680) ctsE 1485656..1487218 (-) 1563 WP_238522833.1 GspE/PulE family protein Machinery gene
  MA853_RS07685 (MA853_07685) - 1487211..1487807 (-) 597 WP_002779313.1 CDC27 family protein -
  MA853_RS07690 (MA853_07690) ctsP 1487804..1488400 (-) 597 WP_002779314.1 ATP-binding protein Machinery gene
  MA853_RS07695 (MA853_07695) ctsD 1488393..1489811 (-) 1419 WP_002779315.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  MA853_RS07700 (MA853_07700) ctsR 1489789..1490100 (-) 312 WP_002779316.1 hypothetical protein Machinery gene
  MA853_RS07705 (MA853_07705) nifJ 1490124..1493684 (-) 3561 WP_002790306.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  MA853_RS07710 (MA853_07710) - 1493788..1494426 (-) 639 WP_002784063.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12269.30 Da        Isoelectric Point: 6.3244

>NTDB_id=655216 MA853_RS07700 WP_002779316.1 1489789..1490100(-) (ctsR) [Campylobacter coli strain 14240-1]
MCFCTLLSYEDFEEYFKILNTKQNVELGNLQNPFFNPTFEKIKDIKIIAIMLDRVKIDNKWYKKGDKIGEAVITDITTKE
IILRYDTLDFKIAFKNNDKINIY

Nucleotide


Download         Length: 312 bp        

>NTDB_id=655216 MA853_RS07700 WP_002779316.1 1489789..1490100(-) (ctsR) [Campylobacter coli strain 14240-1]
TTGTGCTTTTGCACTTTGTTATCATATGAGGATTTTGAAGAATATTTTAAGATTTTAAACACCAAGCAGAATGTAGAGCT
TGGAAATCTTCAAAATCCATTCTTTAATCCTACTTTTGAAAAAATCAAAGACATAAAAATTATTGCTATTATGCTTGATA
GAGTAAAGATTGATAATAAATGGTATAAAAAGGGTGATAAGATAGGGGAGGCCGTGATTACTGATATTACTACAAAAGAA
ATTATTTTAAGATATGATACTTTGGATTTTAAAATAGCGTTTAAAAACAATGATAAGATTAATATTTATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3K5JRX6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

55.882

99.029

0.553