Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   MA853_RS06055 Genome accession   NZ_CP092026
Coordinates   1161983..1162936 (+) Length   317 a.a.
NCBI ID   WP_002810006.1    Uniprot ID   -
Organism   Campylobacter coli strain 14240-1     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1156983..1167936
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MA853_RS06025 (MA853_06025) - 1157329..1158333 (-) 1005 WP_002799671.1 glycosyltransferase family 2 protein -
  MA853_RS06030 (MA853_06030) - 1158334..1158777 (-) 444 WP_002806621.1 acyltransferase -
  MA853_RS06035 (MA853_06035) - 1158767..1159168 (-) 402 WP_002836344.1 FdtA/QdtA family cupin domain-containing protein -
  MA853_RS06040 (MA853_06040) rfbB 1159165..1160196 (-) 1032 WP_002839067.1 dTDP-glucose 4,6-dehydratase -
  MA853_RS06045 (MA853_06045) rfbA 1160200..1161078 (-) 879 WP_233907589.1 glucose-1-phosphate thymidylyltransferase RfbA -
  MA853_RS06050 (MA853_06050) - 1161088..1161924 (-) 837 WP_002810004.1 glycosyltransferase family 2 protein -
  MA853_RS06055 (MA853_06055) waaF 1161983..1162936 (+) 954 WP_002810006.1 glycosyltransferase family 9 protein Regulator
  MA853_RS06060 (MA853_06060) - 1162943..1163698 (-) 756 WP_002820758.1 glycosyltransferase family 25 protein -
  MA853_RS06065 (MA853_06065) gmhA 1163698..1164258 (-) 561 WP_002810017.1 D-sedoheptulose 7-phosphate isomerase -
  MA853_RS06070 (MA853_06070) rfaE1 1164255..1165640 (-) 1386 WP_002786305.1 D-glycero-beta-D-manno-heptose-7-phosphate kinase -
  MA853_RS06075 (MA853_06075) rfaD 1165633..1166586 (-) 954 WP_002780616.1 ADP-glyceromanno-heptose 6-epimerase -
  MA853_RS06080 (MA853_06080) - 1166583..1167145 (-) 563 Protein_1176 D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase -
  MA853_RS06085 (MA853_06085) - 1167222..1167521 (+) 300 WP_002777238.1 cytochrome c -
  MA853_RS06090 (MA853_06090) - 1167551..1167751 (-) 201 WP_002777240.1 cbb3-type cytochrome oxidase assembly protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 36557.11 Da        Isoelectric Point: 10.2521

>NTDB_id=655203 MA853_RS06055 WP_002810006.1 1161983..1162936(+) (waaF) [Campylobacter coli strain 14240-1]
MKIFIHLPTWLGDAVMASPALYAIKEHFKNAQFILYGSLVSTALFKEFPNSKIIIENKQSRYQQALSLRKELGKIDFSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLSIKAHFKDLKLPFKLKFQNPLVLKNGKKILGLNPGA
SFGSAKRWDVSYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHISAVYKVKTVAIFGPTKFTQTSPWQNENARWVHLNLACMPCMQKTCPLKHHKCMKDLKPEIIIEVSKQLLFLN

Nucleotide


Download         Length: 954 bp        

>NTDB_id=655203 MA853_RS06055 WP_002810006.1 1161983..1162936(+) (waaF) [Campylobacter coli strain 14240-1]
ATGAAAATTTTTATACATCTTCCCACTTGGCTAGGCGATGCAGTGATGGCTTCGCCTGCTTTATACGCTATAAAAGAACA
TTTTAAAAATGCCCAATTTATCCTTTATGGCTCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACAATCTCGCTATCAACAAGCCCTATCTTTACGCAAAGAACTTGGCAAAATCGATTTTAGCTTTGCT
TTTAGGTCTGCGTTTTCTTCTAAGATTATCTTACATATTCTTAAAACAAAGCAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTAGTATAAAAGCTCATTTTAAAGACTTAA
AGCTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTGTCTTAAAAAATGGTAAAAAAATTCTAGGACTCAACCCTGGTGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGTGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAGATTTT
AATCTTTGGTGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACTACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGACCTATGCACATAAGTGCGGTTTATAAAGTAAAAACCGTGGCTATTTTTGGGCCTACCAAATTTACTCAAACTTCACC
TTGGCAAAATGAAAATGCAAGATGGGTGCATTTAAATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATTTAAAACCAGAAATCATCATAGAAGTAAGTAAACAATTGCTATTTCTAAATTAA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(96-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

93.312

99.054

0.924