Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OG915_RS11865 Genome accession   NZ_CP108165
Coordinates   2646496..2647488 (+) Length   330 a.a.
NCBI ID   WP_326784771.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00151     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2641496..2652488
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG915_RS11850 (OG915_11875) - 2642295..2642864 (-) 570 WP_326790752.1 DUF305 domain-containing protein -
  OG915_RS11855 (OG915_11880) - 2642891..2644261 (-) 1371 WP_326784770.1 DUF1996 domain-containing protein -
  OG915_RS11860 (OG915_11885) - 2644442..2646133 (-) 1692 WP_326790753.1 discoidin domain-containing protein -
  OG915_RS11865 (OG915_11890) cytR 2646496..2647488 (+) 993 WP_326784771.1 LacI family DNA-binding transcriptional regulator Regulator
  OG915_RS11870 (OG915_11895) - 2647762..2647920 (-) 159 WP_326784772.1 IS3 family transposase -
  OG915_RS11875 (OG915_11900) - 2648561..2649136 (-) 576 WP_326784773.1 hypothetical protein -
  OG915_RS11880 (OG915_11905) - 2649133..2650515 (-) 1383 WP_326784774.1 hypothetical protein -
  OG915_RS11885 (OG915_11910) - 2650512..2651345 (-) 834 WP_326784775.1 ABC transporter ATP-binding protein -
  OG915_RS11890 (OG915_11915) - 2651342..2652160 (-) 819 WP_326784776.1 zf-HC2 domain-containing protein -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 35234.20 Da        Isoelectric Point: 6.3608

>NTDB_id=655202 OG915_RS11865 WP_326784771.1 2646496..2647488(+) (cytR) [Streptomyces sp. NBC_00151]
MKRPTLEVVAARAGVSKSSVSRVINGETTVAPQIRDVVMRAVDELGYVPNGAARNLVTRRTDTLAVVVSDPPQGVVSDDP
LFSAVVRAVSRELETAGKRLVLMLAESDQSRTRVVQYIAGGHVDGVLLVALHGTDPLPAALARQGLPVVSFNRTSAQNVP
YVALDNAGGAALAVRHLLERGRRRIATITGPLELYEARERLDGYRQTLRDTGRRSIAALGDFTRVSGDEAMRQLLEDDPD
LDAVFAANDLMAIGALRTLHKAGRRVPEDVAVVGFDDIEAASYSIPALTSVRSPMADQATAAVHLLLSLIDGGPTSPVIM
PNELVVREST

Nucleotide


Download         Length: 993 bp        

>NTDB_id=655202 OG915_RS11865 WP_326784771.1 2646496..2647488(+) (cytR) [Streptomyces sp. NBC_00151]
ATGAAACGCCCTACTCTCGAAGTGGTCGCAGCCCGGGCGGGCGTGTCCAAATCGAGCGTCTCCCGCGTCATCAACGGCGA
GACGACGGTCGCCCCGCAGATCCGAGACGTCGTCATGCGCGCCGTAGACGAATTGGGCTATGTGCCCAACGGGGCGGCAC
GCAACCTCGTCACCCGCCGCACGGACACCCTCGCCGTGGTGGTCTCCGACCCACCTCAAGGAGTCGTCTCCGACGACCCC
CTCTTCTCCGCCGTGGTCCGCGCCGTCAGCAGAGAACTCGAGACGGCGGGCAAACGGCTCGTGCTCATGCTCGCGGAATC
GGACCAGAGCCGCACCAGAGTGGTGCAGTACATCGCCGGCGGGCATGTCGACGGCGTGCTCCTGGTCGCCCTGCACGGTA
CGGATCCACTGCCGGCCGCACTGGCCCGGCAGGGACTGCCTGTCGTGTCCTTCAACCGCACCTCCGCACAAAACGTCCCG
TACGTGGCCCTGGACAACGCCGGCGGAGCAGCACTGGCCGTACGCCACCTTCTGGAGCGCGGCCGGCGCCGGATCGCCAC
CATCACCGGGCCGCTCGAACTCTACGAAGCGCGTGAGCGTCTCGACGGCTACCGCCAGACACTGCGTGACACCGGCCGTC
GCTCCATCGCGGCGCTGGGCGACTTCACCAGAGTCTCCGGCGACGAAGCCATGCGCCAGCTCCTGGAGGACGATCCGGAC
CTCGACGCGGTGTTCGCGGCCAACGACCTGATGGCAATCGGAGCCCTGCGCACCCTCCATAAAGCGGGCCGACGTGTCCC
CGAAGACGTGGCAGTCGTCGGCTTCGACGACATAGAAGCCGCGTCCTACTCCATCCCCGCGCTCACCTCGGTGCGCAGCC
CGATGGCCGACCAGGCAACCGCCGCCGTCCACCTGCTCCTCAGCCTGATCGACGGCGGCCCCACAAGCCCGGTGATCATG
CCGAACGAACTCGTGGTGCGGGAATCGACCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(5-50)

Periplasmic binding protein-like domain (Peripla_BP_3)

(174-330)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

35.207

100

0.361