Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   MA853_RS03400 Genome accession   NZ_CP092026
Coordinates   662555..663001 (+) Length   148 a.a.
NCBI ID   WP_002785938.1    Uniprot ID   A0A693QN79
Organism   Campylobacter coli strain 14240-1     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 657555..668001
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MA853_RS03380 (MA853_03380) - 658506..659930 (+) 1425 WP_002810958.1 anaerobic C4-dicarboxylate transporter -
  MA853_RS03385 (MA853_03385) uvrB 659965..661938 (-) 1974 WP_002810956.1 excinuclease ABC subunit UvrB -
  MA853_RS03390 (MA853_03390) - 662093..662323 (+) 231 WP_002776426.1 hypothetical protein -
  MA853_RS03395 (MA853_03395) - 662313..662558 (+) 246 WP_002776428.1 hypothetical protein -
  MA853_RS03400 (MA853_03400) Cj0683 662555..663001 (+) 447 WP_002785938.1 type II secretion system protein Machinery gene
  MA853_RS03405 (MA853_03405) - 662998..664836 (+) 1839 WP_002785939.1 primosomal protein N' -
  MA853_RS03410 (MA853_03410) - 664820..665590 (-) 771 WP_002781608.1 sugar phosphate nucleotidyltransferase -
  MA853_RS03415 (MA853_03415) - 665587..666195 (-) 609 WP_002781606.1 gamma-glutamyl-CDP-amidate hydrolase -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17312.23 Da        Isoelectric Point: 8.7735

>NTDB_id=655198 MA853_RS03400 WP_002785938.1 662555..663001(+) (Cj0683) [Campylobacter coli strain 14240-1]
MKKAFTLLELVFVILILGILASLSFSFVNQNKNDAKLLKLKIDYEMLNSALSLMRTQTELKQINAFSPNLDEAKINTQKE
KLFYCQTSQNCTYSLLHTPIYSSFNAWMKTAPNRYRFFLNAKEWVDFFYNANFAILECLSEKYCKELL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=655198 MA853_RS03400 WP_002785938.1 662555..663001(+) (Cj0683) [Campylobacter coli strain 14240-1]
ATGAAAAAGGCTTTTACTCTTTTAGAGCTTGTTTTTGTGATATTGATTTTGGGGATATTAGCAAGTTTAAGCTTCTCTTT
TGTCAATCAAAATAAAAATGATGCAAAATTGTTAAAATTAAAAATAGATTATGAAATGCTAAATTCAGCCCTGTCTCTTA
TGCGCACTCAGACTGAACTTAAGCAAATCAATGCTTTTTCTCCTAATCTTGATGAAGCAAAAATCAATACTCAAAAAGAA
AAGCTATTTTACTGTCAAACTAGCCAAAATTGCACTTATTCTTTACTTCACACACCCATTTATTCTAGTTTTAATGCTTG
GATGAAAACAGCACCCAACCGATATAGATTTTTTTTAAATGCAAAAGAATGGGTTGATTTTTTTTATAATGCCAATTTTG
CTATTTTAGAATGTCTTAGTGAAAAATATTGTAAAGAATTGTTATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A693QN79

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.459

100

0.595