Detailed information    

insolico Bioinformatically predicted

Overview


Name   kpsS   Type   Regulator
Locus tag   MA852_RS07405 Genome accession   NZ_CP092025
Coordinates   1418797..1419981 (-) Length   394 a.a.
NCBI ID   WP_238505047.1    Uniprot ID   -
Organism   Campylobacter coli strain 14158-6     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context


Location: 1413797..1424981
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MA852_RS07380 (MA852_07380) fliL 1414944..1415480 (+) 537 WP_002779164.1 flagellar basal body-associated protein FliL -
  MA852_RS07385 (MA852_07385) acpS 1415481..1415828 (+) 348 WP_002825806.1 holo-ACP synthase -
  MA852_RS07390 (MA852_07390) - 1415829..1416248 (-) 420 WP_002880391.1 hypothetical protein -
  MA852_RS07395 (MA852_07395) - 1416245..1417606 (-) 1362 WP_002780438.1 cytochrome P450 -
  MA852_RS07400 (MA852_07400) - 1417603..1418724 (-) 1122 WP_002858304.1 membrane protein -
  MA852_RS07405 (MA852_07405) kpsS 1418797..1419981 (-) 1185 WP_238505047.1 capsule biosynthesis protein Regulator
  MA852_RS07410 (MA852_07410) - 1419978..1422047 (-) 2070 WP_238505048.1 capsular polysaccharide biosynthesis protein -
  MA852_RS07415 (MA852_07415) - 1422044..1422556 (-) 513 WP_002818256.1 cytidine diphosphoramidate kinase -
  MA852_RS07420 (MA852_07420) - 1422546..1423307 (-) 762 WP_014516846.1 CTP:phosphoglutamine cytidylyltransferase -
  MA852_RS07425 (MA852_07425) - 1423309..1423911 (-) 603 WP_002872737.1 gamma-glutamyl-CDP-amidate hydrolase -

Sequence


Protein


Download         Length: 394 a.a.        Molecular weight: 46965.75 Da        Isoelectric Point: 9.9736

>NTDB_id=655185 MA852_RS07405 WP_238505047.1 1418797..1419981(-) (kpsS) [Campylobacter coli strain 14158-6]
MRFNTKIKKEFSGKNVLLLQGPVGNFFHHLAVKMRKNQTKVFKLNFNGGDFFFYPSGKRCKCDEKDLENFYENFFKEKKI
DAIVMYNDCRLIHAKAIKVAKELGIEIWIFEEGYLRPYCITLEKDGVNANSSLPRDKNFYLSQNIFTKESIKEIPGGFKF
MAFDAFLYWLFAFILAPFFNNKLHHRTLYPFEFLFWFRSLYRKYLYKITEKKLNEKIYNLEKKYFLAILQVYSDTQIKYH
YKKSIEHFIEETILSFANHARAKSYLVFKHHPMDRGYKNYFKLINDLSRKYHVEGRVLYVHDTHLPVLLRKALGCITINS
TVGLSAILEGCPTKVCGNAFYNFEGLSYPKKLQFFWREAHAYKPNPVLVCNFKKYLLQTNQFNGNFYKNFFLDK

Nucleotide


Download         Length: 1185 bp        

>NTDB_id=655185 MA852_RS07405 WP_238505047.1 1418797..1419981(-) (kpsS) [Campylobacter coli strain 14158-6]
ATGAGATTTAACACTAAAATTAAAAAAGAATTTAGCGGTAAAAATGTTTTACTCTTGCAAGGGCCTGTGGGAAATTTTTT
TCATCATCTTGCAGTGAAAATGAGAAAAAACCAAACCAAAGTTTTTAAACTCAATTTTAACGGCGGAGATTTTTTTTTCT
ATCCAAGTGGAAAAAGGTGCAAGTGCGACGAAAAGGATCTTGAAAATTTCTATGAAAATTTTTTCAAAGAAAAAAAAATA
GATGCTATTGTGATGTATAATGATTGCCGTTTGATTCACGCAAAGGCTATTAAAGTGGCTAAAGAATTAGGAATTGAAAT
ATGGATTTTTGAAGAAGGATATTTAAGGCCTTATTGTATTACTTTGGAAAAAGATGGGGTGAATGCAAATTCTTCTTTAC
CGCGTGATAAAAATTTTTATCTTTCTCAAAATATTTTTACCAAAGAAAGCATAAAAGAAATTCCAGGTGGATTTAAATTT
ATGGCTTTTGATGCTTTTTTGTATTGGTTGTTTGCTTTTATTTTGGCTCCATTTTTTAACAACAAACTTCATCATCGCAC
TTTATATCCTTTTGAATTTTTATTTTGGTTTAGATCATTGTATAGAAAGTATCTTTATAAGATTACAGAAAAAAAACTAA
ATGAAAAGATTTATAATTTAGAAAAAAAGTACTTTTTGGCGATTTTACAAGTTTATAGCGATACGCAAATTAAATATCAT
TACAAAAAAAGCATAGAGCACTTTATAGAGGAAACCATACTTTCTTTTGCAAACCATGCAAGAGCTAAATCTTATCTAGT
TTTTAAACACCATCCCATGGATAGGGGCTATAAGAATTATTTTAAACTTATAAATGATTTAAGTCGAAAATATCATGTAG
AAGGAAGGGTTTTATATGTTCATGATACCCACTTGCCAGTTCTTTTAAGAAAGGCTTTGGGTTGTATTACTATAAATTCA
ACAGTAGGCCTTAGTGCTATTTTAGAAGGCTGTCCGACTAAGGTTTGTGGCAATGCTTTTTATAATTTTGAAGGCTTATC
TTATCCAAAAAAACTTCAATTTTTTTGGCGTGAAGCTCATGCTTATAAACCCAATCCTGTTTTGGTATGTAATTTTAAGA
AATATCTTTTACAAACTAATCAATTCAACGGCAATTTTTATAAAAATTTCTTTTTAGACAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

97.97

100

0.98