Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   MA852_RS03350 Genome accession   NZ_CP092025
Coordinates   639350..639796 (+) Length   148 a.a.
NCBI ID   WP_002825371.1    Uniprot ID   A0A2A4L594
Organism   Campylobacter coli strain 14158-6     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 634350..644796
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MA852_RS03330 (MA852_03330) - 635302..636726 (+) 1425 Protein_642 anaerobic C4-dicarboxylate transporter -
  MA852_RS03335 (MA852_03335) uvrB 636761..638734 (-) 1974 WP_057032557.1 excinuclease ABC subunit UvrB -
  MA852_RS03340 (MA852_03340) - 638888..639118 (+) 231 WP_002776426.1 hypothetical protein -
  MA852_RS03345 (MA852_03345) - 639108..639353 (+) 246 WP_002776428.1 hypothetical protein -
  MA852_RS03350 (MA852_03350) Cj0683 639350..639796 (+) 447 WP_002825371.1 type II secretion system protein Machinery gene
  MA852_RS03355 (MA852_03355) - 639793..641631 (+) 1839 WP_057044795.1 primosomal protein N' -
  MA852_RS03360 (MA852_03360) - 641641..643035 (-) 1395 WP_057044797.1 DUF2972 domain-containing protein -
  MA852_RS03365 (MA852_03365) ispG 643181..644254 (+) 1074 WP_238505206.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17303.13 Da        Isoelectric Point: 8.4538

>NTDB_id=655174 MA852_RS03350 WP_002825371.1 639350..639796(+) (Cj0683) [Campylobacter coli strain 14158-6]
MKKAFTLLELVFVILILGILASLSFSFANQNKNDAKLLKLKIDYEMLNSALSLMRTQVELKQISSFSPNLDEAKNNTQKE
KLFYCQTSQNCTYSLLHTPIYSSFNAWMKTAPNRYRFFLNTKEWVDFFYNADFAILECLSEKYCKELL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=655174 MA852_RS03350 WP_002825371.1 639350..639796(+) (Cj0683) [Campylobacter coli strain 14158-6]
ATGAAAAAGGCTTTTACTCTCTTAGAGCTTGTTTTTGTGATATTGATTTTGGGGATATTGGCAAGTTTAAGCTTCTCTTT
TGCCAATCAAAATAAAAACGATGCGAAATTATTAAAATTGAAAATAGATTATGAAATGCTAAATTCAGCCCTATCCCTTA
TGCGTACTCAAGTTGAACTCAAACAAATCAGTTCTTTTTCTCCTAATCTTGATGAAGCAAAAAACAATACTCAAAAAGAA
AAGCTATTTTACTGCCAAACTAGCCAAAACTGTACTTATTCTTTACTTCACACACCTATTTATTCTAGTTTTAATGCTTG
GATGAAAACAGCACCCAATCGATATAGATTTTTTTTAAATACAAAAGAATGGGTTGATTTTTTTTATAATGCTGATTTTG
CTATTTTAGAATGTTTGAGTGAAAAATATTGTAAAGAATTATTATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2A4L594

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.784

100

0.588