Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   MA848_RS07335 Genome accession   NZ_CP092018
Coordinates   1460168..1460479 (-) Length   103 a.a.
NCBI ID   WP_002855438.1    Uniprot ID   A0AA44HLF8
Organism   Campylobacter jejuni subsp. jejuni strain 15363C     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1455168..1465479
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MA848_RS07315 (MA848_07315) ctsE 1456037..1457596 (-) 1560 WP_002864463.1 GspE/PulE family protein Machinery gene
  MA848_RS07320 (MA848_07320) ctsX 1457586..1458173 (-) 588 WP_002851370.1 membrane protein Machinery gene
  MA848_RS07325 (MA848_07325) ctsP 1458177..1458785 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  MA848_RS07330 (MA848_07330) ctsD 1458778..1460190 (-) 1413 WP_002862130.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  MA848_RS07335 (MA848_07335) ctsR 1460168..1460479 (-) 312 WP_002855438.1 hypothetical protein Machinery gene
  MA848_RS07340 (MA848_07340) nifJ 1460503..1464063 (-) 3561 WP_002851382.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  MA848_RS07345 (MA848_07345) - 1464156..1464797 (-) 642 WP_057035815.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12475.38 Da        Isoelectric Point: 5.8722

>NTDB_id=655118 MA848_RS07335 WP_002855438.1 1460168..1460479(-) (ctsR) [Campylobacter jejuni subsp. jejuni strain 15363C]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIYEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=655118 MA848_RS07335 WP_002855438.1 1460168..1460479(-) (ctsR) [Campylobacter jejuni subsp. jejuni strain 15363C]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGTATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATATATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

100

100

1