Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG851_RS29320 Genome accession   NZ_CP108156
Coordinates   6322379..6323170 (-) Length   263 a.a.
NCBI ID   WP_406512846.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00161     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6317379..6328170
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG851_RS29305 (OG851_29215) - 6317437..6318150 (+) 714 WP_266636110.1 GNAT family N-acetyltransferase -
  OG851_RS29310 (OG851_29220) - 6318334..6320208 (+) 1875 WP_406512845.1 IucA/IucC family protein -
  OG851_RS29315 (OG851_29225) - 6320261..6322231 (+) 1971 WP_266636106.1 ATP-dependent DNA helicase -
  OG851_RS29320 (OG851_29230) dinR/lexA 6322379..6323170 (-) 792 WP_406512846.1 transcriptional repressor LexA Regulator
  OG851_RS29325 (OG851_29235) nrdR 6323640..6324152 (+) 513 WP_134070617.1 transcriptional regulator NrdR -
  OG851_RS29330 (OG851_29240) - 6324285..6327173 (+) 2889 WP_327361464.1 vitamin B12-dependent ribonucleotide reductase -
  OG851_RS29335 (OG851_29245) - 6327276..6327671 (-) 396 WP_406512847.1 winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 28499.32 Da        Isoelectric Point: 7.4240

>NTDB_id=655096 OG851_RS29320 WP_406512846.1 6322379..6323170(-) (dinR/lexA) [Streptomyces sp. NBC_00161]
MTTTADSATITAQNRSQSRLEPVHPMNDASLNPEAEPVRPARSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPP
SMREIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSSPPTDTTGKPAASYVPLVGRIAAGGPILAEE
SVEDVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHNA
AYQPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 792 bp        

>NTDB_id=655096 OG851_RS29320 WP_406512846.1 6322379..6323170(-) (dinR/lexA) [Streptomyces sp. NBC_00161]
GTGACCACCACCGCAGACAGTGCCACCATCACTGCCCAGAACCGCTCCCAGAGCCGACTCGAGCCGGTGCATCCCATGAA
TGACGCAAGCCTGAACCCGGAGGCGGAGCCCGTACGCCCCGCACGATCGCTGCCAGGTCGACCTCCAGGCATCCGCGCCG
ACAGCTCCGGACTCACCGACCGGCAGCGGAGGGTCATCGAAGTCATTCGCGATTCGGTGCAGCGGCGCGGCTACCCGCCG
TCGATGCGGGAGATCGGCCAGGCGGTCGGCCTGTCCAGCACGTCGTCGGTCGCGCACCAGCTGATGGCCCTCGAGCGCAA
GGGCTTCCTGCGCCGGGACCCGCACCGCCCCCGGGCGTACGAGGTCCGCGGCTCCGACCAGCCCAGCTCGCCGCCCACGG
ACACCACCGGCAAGCCCGCCGCCTCGTACGTCCCCCTGGTCGGCCGGATCGCGGCCGGCGGCCCGATCCTCGCCGAGGAG
TCGGTGGAGGACGTGTTCCCGCTCCCCCGCCAGCTCGTCGGCGACGGAGAGCTCTTCGTCCTCAAGGTCGTCGGCGACTC
GATGATCGAGGCCGCCATCTGCGACGGCGACTGGGTCACGGTCCGCCGTCAGCCGGTCGCGGAGAACGGCGACATCGTGG
CTGCGATGCTCGACGGCGAGGCCACCGTCAAGCGCTTCAAGCGCGAGGACGGCCATGTCTGGCTGCTCCCGCACAACGCC
GCCTACCAGCCGATCCCCGGCGACGAGGCGACCATCCTCGGCAAGGTCGTCGCGGTACTGCGCCGGGTCTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(145-257)

LexA DNA binding domain (LexA_DNA_bind)

(56-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.226

80.608

0.373