Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   OG851_RS28460 Genome accession   NZ_CP108156
Coordinates   6109150..6110367 (+) Length   405 a.a.
NCBI ID   WP_266636376.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00161     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6104150..6115367
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG851_RS28445 (OG851_28355) - 6104986..6106422 (+) 1437 WP_406512804.1 sugar porter family MFS transporter -
  OG851_RS28450 (OG851_28360) - 6106472..6107458 (-) 987 WP_406512805.1 LLM class flavin-dependent oxidoreductase -
  OG851_RS28455 (OG851_28365) - 6107522..6109006 (-) 1485 WP_406512806.1 cytosine permease -
  OG851_RS28460 (OG851_28370) pilA 6109150..6110367 (+) 1218 WP_266636376.1 signal recognition particle-docking protein FtsY Machinery gene
  OG851_RS28465 (OG851_28375) - 6110449..6111117 (-) 669 WP_266636374.1 bifunctional DNA primase/polymerase -
  OG851_RS28470 (OG851_28380) - 6111525..6113030 (+) 1506 WP_389870451.1 hypothetical protein -
  OG851_RS28475 (OG851_28385) - 6113347..6114693 (+) 1347 WP_266636372.1 ammonium transporter -
  OG851_RS28480 (OG851_28390) - 6114690..6115028 (+) 339 WP_266636370.1 P-II family nitrogen regulator -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 42393.55 Da        Isoelectric Point: 4.4015

>NTDB_id=655091 OG851_RS28460 WP_266636376.1 6109150..6110367(+) (pilA) [Streptomyces sp. NBC_00161]
MDILILAVVIALVAVGVISGLVVGSRKKKQLPPSAPPSTPTITAPPAEPQVGEDAVETAEEPRRTIEEVGLPEAEAAAPE
APAVVEPEAPAAPEIEVPEPTAGRLIRLRARLARSQNSLGKGLLTLLSREHLDEDTWEEIEETLLIADVGVVPTQELVDR
LRERVKVLGTRTPADLRALLKEELLTLVGTDFDRAVKTESGVDTPGVVMVVGVNGTGKTTTTGKLARVLVADGRSVVLGA
ADTFRAAAADQLQTWGERVGARTVRGPEGGDPASIAYDAVKEGIAEGADVVLIDTAGRLHTKTGLMDELGKVKRVVEKHG
PLDEILLVLDATTGQNGLTQARVFAEVVDITGIVLTKLDGTAKGGIVVAVQRELGVPVKLIGLGEGPDDLAPFEPEAFVD
ALIGD

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=655091 OG851_RS28460 WP_266636376.1 6109150..6110367(+) (pilA) [Streptomyces sp. NBC_00161]
ATGGACATCCTCATCCTTGCTGTAGTCATCGCCCTGGTCGCGGTCGGCGTGATCAGCGGGCTCGTGGTCGGCAGCCGCAA
GAAGAAGCAGCTGCCGCCCTCGGCGCCGCCCAGCACACCGACCATCACTGCCCCGCCCGCCGAACCGCAGGTGGGGGAGG
ACGCCGTAGAGACGGCGGAAGAACCCCGCCGCACCATCGAGGAGGTCGGCCTCCCCGAAGCGGAGGCTGCGGCTCCCGAG
GCGCCCGCAGTCGTCGAACCCGAGGCTCCGGCCGCCCCCGAGATCGAGGTGCCCGAGCCCACCGCCGGCCGCCTGATCCG
GCTGCGCGCCCGCCTCGCCCGGTCGCAGAACTCGCTCGGCAAGGGGCTGCTCACGCTGCTCTCGCGCGAGCACCTCGACG
AGGACACCTGGGAGGAGATCGAGGAGACCCTCCTGATCGCCGACGTCGGTGTCGTGCCGACGCAGGAGCTCGTGGACCGG
CTCCGCGAGCGGGTCAAGGTGCTCGGCACCCGCACCCCCGCGGACCTGCGCGCCCTGCTCAAGGAGGAGCTGCTGACCCT
GGTCGGCACCGACTTCGACCGCGCGGTGAAGACCGAGAGCGGCGTGGACACCCCGGGCGTCGTGATGGTCGTGGGGGTCA
ACGGCACCGGCAAGACCACCACCACCGGCAAGCTGGCCCGCGTGCTCGTCGCCGACGGCCGCTCCGTGGTGCTCGGCGCC
GCCGACACCTTCCGTGCCGCCGCCGCCGACCAGCTGCAGACCTGGGGCGAGCGGGTCGGCGCGCGCACCGTACGCGGCCC
CGAGGGCGGCGACCCGGCCTCGATCGCCTACGACGCGGTCAAGGAGGGCATCGCCGAGGGCGCCGACGTGGTGCTCATCG
ACACCGCCGGCCGCCTCCACACCAAGACCGGCCTCATGGACGAGCTCGGCAAGGTCAAGCGCGTCGTGGAGAAGCACGGC
CCGCTGGACGAGATCCTGCTGGTCCTGGACGCCACCACCGGGCAGAACGGCCTGACCCAGGCCCGCGTCTTCGCCGAGGT
CGTGGACATCACCGGCATCGTGCTGACCAAGCTCGACGGCACCGCCAAGGGCGGCATCGTCGTCGCCGTCCAGCGCGAGC
TCGGCGTCCCGGTCAAGCTCATCGGCCTCGGCGAGGGCCCGGACGACCTGGCGCCCTTCGAGCCGGAGGCGTTCGTGGAC
GCCCTGATCGGCGACTGA

Domains

Predicted by InterProScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(119-184)

SRP54-type protein, GTPase domain (SRP54)

(206-403)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

39.709

100

0.405