Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OG851_RS14300 Genome accession   NZ_CP108156
Coordinates   3076254..3078176 (+) Length   640 a.a.
NCBI ID   WP_266629468.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00161     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3071254..3083176
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG851_RS14265 (OG851_14240) - 3071294..3071527 (-) 234 WP_327362831.1 type II toxin-antitoxin system VapB family antitoxin -
  OG851_RS14285 (OG851_14260) - 3072524..3072826 (+) 303 WP_406512056.1 YtxH domain-containing protein -
  OG851_RS14290 (OG851_14265) - 3072911..3074365 (+) 1455 WP_266629472.1 FGGY family carbohydrate kinase -
  OG851_RS14295 (OG851_14270) rcrP 3074524..3076257 (+) 1734 WP_405703063.1 ABC transporter ATP-binding protein Regulator
  OG851_RS14300 (OG851_14275) rcrQ 3076254..3078176 (+) 1923 WP_266629468.1 ABC transporter ATP-binding protein Regulator
  OG851_RS14305 (OG851_14280) - 3078263..3079408 (-) 1146 WP_266629466.1 RNA polymerase sigma factor -
  OG851_RS14310 (OG851_14285) - 3079502..3080110 (+) 609 WP_406512057.1 hypothetical protein -
  OG851_RS14315 (OG851_14290) - 3080107..3081045 (+) 939 WP_406512058.1 nucleotidyl transferase AbiEii/AbiGii toxin family protein -
  OG851_RS14320 (OG851_14295) - 3081053..3083131 (-) 2079 WP_266629462.1 molybdopterin oxidoreductase family protein -

Sequence

Protein


Download         Length: 640 a.a.        Molecular weight: 68912.48 Da        Isoelectric Point: 5.4166

>NTDB_id=655052 OG851_RS14300 WP_266629468.1 3076254..3078176(+) (rcrQ) [Streptomyces sp. NBC_00161]
MSGPGGRMMMGPAERSLDFKSSGKRLLRQIAHDRTKLWGMVVAVVGSVGCSVIGPKILGEATDLVFAGIVGRQMPAGITK
QQALDGLRAKGEGGMADMLSGTDFTPGEGIDFGAVGVVAIWALVVFTLAGLLMLVATRLSNHIMNGTVYRMREELQGKLS
RLPLSYFDRQKRGEVLSRATNDIDNIGQTLQQTMGQLLNSLLTIVGVLAMMLWISPLLALVALLTIPVSVFVAAKIGKKS
QPQFVAQWKSTGALNAHIEEMYSGHALVKVFGRQKESAALFAEQNEALYRASFKAQLVSGIMQPVMFFISNINYVLVAVV
GGLRVASGTLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERVYELLDAQEQEPDTAVPERPEQLRGQVTLDKV
AFRYEPDKPLIENLSLTVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVTGGEIALDGVDIAKMTREELRSGIGMVLQDTWL
FGGTIAENIAYGASREVTRAEIEEAARAAHADRFVRTLPDGYDTVLDDEGAGVSAGEKQLITIARAFLSDPVILVLDEAT
SSVDTRTEVLIQKAMARLAHGRTSFVIAHRLSTIRDADVILVMENGSIVEQGTHEELLAADGAYARLYAAQFAQAVAEVD

Nucleotide


Download         Length: 1923 bp        

>NTDB_id=655052 OG851_RS14300 WP_266629468.1 3076254..3078176(+) (rcrQ) [Streptomyces sp. NBC_00161]
ATGAGCGGGCCCGGAGGACGGATGATGATGGGGCCGGCCGAGCGGTCCCTGGATTTCAAGAGCTCGGGCAAACGGCTGCT
GCGCCAGATCGCGCACGACCGGACCAAGCTGTGGGGCATGGTCGTCGCCGTCGTCGGCAGCGTCGGCTGCTCGGTCATCG
GCCCGAAGATCCTCGGCGAGGCCACCGACCTGGTGTTCGCGGGGATCGTCGGCCGGCAGATGCCGGCCGGGATCACCAAG
CAACAGGCGCTGGACGGGCTGCGCGCCAAGGGCGAGGGCGGCATGGCGGACATGCTGTCCGGCACCGACTTCACCCCCGG
CGAGGGCATCGACTTCGGTGCCGTCGGGGTCGTGGCGATCTGGGCGCTGGTGGTCTTCACCCTCGCCGGCCTGCTGATGC
TGGTCGCGACGCGGCTGTCGAACCACATCATGAACGGCACCGTGTACCGGATGCGCGAGGAGCTGCAGGGGAAGCTGTCG
CGGCTGCCGCTGTCGTACTTCGACCGGCAAAAGCGCGGTGAGGTGCTCAGCCGGGCCACCAACGACATCGACAACATCGG
GCAGACGCTGCAGCAGACGATGGGTCAGCTGCTCAACTCGCTGCTGACGATCGTCGGCGTGCTGGCGATGATGCTCTGGA
TCTCTCCGCTGCTGGCGCTGGTCGCCCTGCTGACCATTCCCGTCTCGGTCTTCGTCGCGGCGAAGATCGGCAAGAAGTCG
CAGCCTCAGTTCGTGGCGCAGTGGAAGTCCACGGGAGCGCTCAACGCGCACATCGAGGAGATGTACTCGGGCCACGCACT
GGTCAAGGTCTTCGGCCGGCAGAAGGAGTCCGCGGCGCTCTTCGCCGAGCAGAACGAGGCGCTGTACCGGGCCTCGTTCA
AGGCGCAGCTGGTCAGCGGGATCATGCAGCCGGTGATGTTCTTCATCTCGAACATCAACTACGTGCTGGTGGCGGTCGTC
GGCGGTCTGCGGGTGGCCTCGGGCACCCTGTCGATCGGTGACGTGCAGGCCTTCATCCAGTACTCGCGCCAGTTCTCGAT
GCCGCTGACGCAGGTCGCGTCGATGGCGAACCTGGTGCAGTCCGGTGTCGCCTCGGCGGAGCGGGTGTACGAGCTGCTCG
ACGCGCAGGAGCAGGAGCCGGACACCGCGGTGCCGGAGCGGCCGGAGCAGCTTCGGGGCCAGGTCACGCTCGACAAGGTG
GCCTTCCGGTACGAGCCGGACAAGCCGCTGATCGAGAACCTGTCGCTGACCGTCGAGCCCGGCCACACGGTCGCGATCGT
CGGCCCGACGGGCGCCGGCAAGACCACGCTGGTCAACCTGCTGATGCGGTTCTACGAGGTCACGGGCGGCGAGATCGCCC
TCGACGGGGTGGACATCGCGAAGATGACCCGCGAGGAACTGCGCAGCGGGATCGGCATGGTGCTCCAGGACACGTGGCTG
TTCGGCGGCACCATCGCGGAGAACATCGCCTACGGTGCTTCGCGCGAGGTCACGCGCGCCGAGATCGAGGAGGCGGCGCG
GGCCGCCCACGCGGACCGGTTCGTCCGCACCCTGCCGGACGGCTACGACACCGTGCTGGACGACGAGGGCGCGGGCGTCA
GCGCGGGCGAGAAGCAGCTGATCACCATCGCCCGGGCGTTCCTGTCGGACCCGGTGATCCTGGTGCTCGACGAGGCGACG
AGCTCGGTGGACACCCGTACCGAGGTGCTGATCCAGAAGGCGATGGCCCGCCTCGCGCACGGCCGTACGTCCTTCGTGAT
CGCGCACCGGCTGTCCACGATCCGCGATGCGGACGTGATCCTGGTGATGGAGAACGGCTCGATCGTGGAGCAGGGCACGC
ACGAGGAGCTGCTGGCGGCGGACGGCGCGTACGCGCGGCTGTACGCGGCGCAGTTCGCGCAGGCGGTGGCCGAGGTCGAT
TAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(55-349)

ABC transporter (ABC_tran)

(412-561)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

40.032

97.188

0.389