Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG851_RS14295 Genome accession   NZ_CP108156
Coordinates   3074524..3076257 (+) Length   577 a.a.
NCBI ID   WP_405703063.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00161     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3069524..3081257
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG851_RS14250 (OG851_14225) - 3069746..3069892 (-) 147 WP_327362834.1 hypothetical protein -
  OG851_RS14255 (OG851_14230) - 3070271..3070861 (+) 591 WP_327362833.1 CHAT domain-containing protein -
  OG851_RS14260 (OG851_14235) - 3070890..3071297 (-) 408 WP_327362832.1 PIN domain nuclease -
  OG851_RS14265 (OG851_14240) - 3071294..3071527 (-) 234 WP_327362831.1 type II toxin-antitoxin system VapB family antitoxin -
  OG851_RS14285 (OG851_14260) - 3072524..3072826 (+) 303 WP_406512056.1 YtxH domain-containing protein -
  OG851_RS14290 (OG851_14265) - 3072911..3074365 (+) 1455 WP_266629472.1 FGGY family carbohydrate kinase -
  OG851_RS14295 (OG851_14270) rcrP 3074524..3076257 (+) 1734 WP_405703063.1 ABC transporter ATP-binding protein Regulator
  OG851_RS14300 (OG851_14275) rcrQ 3076254..3078176 (+) 1923 WP_266629468.1 ABC transporter ATP-binding protein Regulator
  OG851_RS14305 (OG851_14280) - 3078263..3079408 (-) 1146 WP_266629466.1 RNA polymerase sigma factor -
  OG851_RS14310 (OG851_14285) - 3079502..3080110 (+) 609 WP_406512057.1 hypothetical protein -
  OG851_RS14315 (OG851_14290) - 3080107..3081045 (+) 939 WP_406512058.1 nucleotidyl transferase AbiEii/AbiGii toxin family protein -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62433.41 Da        Isoelectric Point: 5.1549

>NTDB_id=655051 OG851_RS14295 WP_405703063.1 3074524..3076257(+) (rcrP) [Streptomyces sp. NBC_00161]
MLIRLLRTHLSPYRKPIALLVLLQLLQTSASLYLPTLNADIIDNGVVSGDTGYILRSGALMLGVSLVQLGCNVGAVYFGA
RTAAAVGRDIRASVFDRVQSFSARELGQFGAPSLITRTTNDVQQIQMLVLMTFTLMVSAPIMCIGGIAMALSLDVKLSGV
LLAVVPVLGLSVGAIVFRTRPLFRKMQVRLDTVNRVLREQITGNRVIRAFVRDEYEKDRFREANADLTGVSLAAGKLLAL
MFPTVIVVVNISSVAVIWFGAMRIDSGGMEIGQLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERVQEVLDTESSVVP
PVDPVRGLLTRGQLELRGADFRYPGAEAPVLRGVDLVARPGETTAVIGSTGSGKSTLLGLVPRLFDATGGHVLVDGEDVR
RIEPELLAKTVGMVPQKPYLFSGTVASNLRYGRPDATDEELWHALEVAQARDFVAELEGGLDAPVTQGGTNVSGGQRQRL
AIARTLVQSPEIYLFDDSFSALDYATDAALRAALARETEDATVVIVAQRVSTIRDADRIIVLDEGQVVGEGRHHELMADN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=655051 OG851_RS14295 WP_405703063.1 3074524..3076257(+) (rcrP) [Streptomyces sp. NBC_00161]
GTGCTCATACGACTTCTGCGGACCCATCTGAGTCCGTACCGGAAACCGATCGCCCTCCTGGTCCTGCTGCAACTGCTGCA
GACCAGTGCGAGCCTCTACCTCCCCACCCTGAACGCCGACATCATCGACAACGGTGTAGTCAGCGGGGACACCGGCTACA
TCCTGCGCTCCGGCGCCCTGATGCTCGGCGTCTCCCTCGTCCAGCTCGGGTGCAACGTCGGCGCCGTCTACTTCGGCGCC
CGTACCGCGGCCGCCGTCGGCCGCGACATCCGTGCGTCCGTCTTCGACCGGGTGCAGAGCTTCTCCGCGCGGGAGCTCGG
ACAGTTCGGCGCGCCCTCGCTGATCACCCGTACGACGAACGACGTGCAGCAGATCCAGATGCTGGTGCTGATGACCTTCA
CGCTGATGGTCTCCGCGCCGATCATGTGCATCGGCGGCATCGCCATGGCGCTCTCGCTCGACGTGAAGCTGTCGGGCGTC
CTGCTGGCCGTGGTCCCCGTCCTCGGCCTGTCGGTCGGCGCGATCGTCTTCAGGACGCGGCCGTTGTTCCGGAAGATGCA
GGTCCGCCTGGACACCGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGCGTCATCCGCGCGTTCGTCCGCGACG
AGTACGAGAAGGATCGGTTCCGCGAGGCCAACGCGGACCTGACCGGGGTCTCCCTCGCGGCCGGCAAGCTGCTCGCCCTG
ATGTTCCCGACCGTGATCGTCGTCGTGAACATCTCCAGCGTCGCCGTCATCTGGTTCGGCGCGATGCGCATCGACAGCGG
CGGCATGGAGATCGGCCAGCTGACGGCCTTCCTCGCCTACCTGATGCAGATCGTCATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTCTGCGCCGAGCGTGTCCAGGAGGTCCTGGACACCGAGTCCAGCGTGGTCCCG
CCCGTCGACCCGGTGCGGGGGCTCCTCACCCGCGGTCAGCTGGAGCTGCGCGGCGCCGACTTCCGCTACCCGGGCGCCGA
GGCCCCGGTGCTGCGCGGGGTGGACCTGGTGGCCCGCCCCGGCGAGACCACGGCGGTGATCGGCTCCACCGGCAGCGGCA
AGTCCACGCTGCTGGGCCTGGTGCCGCGGCTGTTCGACGCGACCGGCGGCCACGTGCTGGTCGACGGGGAGGACGTACGC
CGCATCGAGCCGGAGCTGCTGGCCAAGACGGTCGGCATGGTCCCGCAGAAGCCGTACCTCTTCTCCGGAACCGTCGCCTC
CAACCTGCGGTACGGGCGTCCCGACGCCACCGACGAGGAGCTGTGGCACGCGCTCGAGGTGGCGCAGGCCAGGGACTTCG
TGGCCGAGCTGGAGGGCGGTCTGGACGCGCCCGTCACCCAGGGCGGAACGAACGTCTCCGGAGGCCAGCGCCAGCGCCTG
GCCATCGCCCGCACGCTGGTGCAGAGCCCGGAGATCTACCTCTTCGACGACTCCTTCTCGGCCCTGGACTACGCGACGGA
CGCGGCGCTGCGCGCGGCGCTCGCCCGTGAGACCGAGGACGCGACGGTGGTCATCGTCGCGCAGCGGGTCTCCACGATCC
GCGACGCCGACCGGATCATCGTGCTGGACGAGGGCCAGGTCGTCGGCGAGGGGCGCCACCACGAGCTGATGGCCGACAAC
GAGACCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAGGCGGAGGCCGCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(352-498)

ABC transporter transmembrane region (ABC_membrane)

(19-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.506

98.267

0.388