Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG768_RS29255 Genome accession   NZ_CP108145
Coordinates   6609784..6611517 (-) Length   577 a.a.
NCBI ID   WP_266768398.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00172     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 6604784..6616517
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG768_RS29245 (OG768_29230) - 6606398..6607708 (+) 1311 WP_328831600.1 RNA polymerase sigma factor -
  OG768_RS29250 (OG768_29235) rcrQ 6607856..6609784 (-) 1929 WP_328934061.1 ABC transporter ATP-binding protein Regulator
  OG768_RS29255 (OG768_29240) rcrP 6609784..6611517 (-) 1734 WP_266768398.1 ABC transporter ATP-binding protein Regulator
  OG768_RS29260 (OG768_29245) - 6611681..6613138 (-) 1458 WP_328934062.1 FGGY family carbohydrate kinase -
  OG768_RS29265 (OG768_29250) - 6613190..6613495 (-) 306 WP_266768396.1 YtxH domain-containing protein -
  OG768_RS29285 (OG768_29270) - 6614209..6614976 (-) 768 WP_328831604.1 LamG-like jellyroll fold domain-containing protein -
  OG768_RS29290 (OG768_29275) - 6615207..6616016 (-) 810 WP_328934063.1 enoyl-CoA hydratase/isomerase family protein -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62756.04 Da        Isoelectric Point: 6.1900

>NTDB_id=654906 OG768_RS29255 WP_266768398.1 6609784..6611517(-) (rcrP) [Streptomyces sp. NBC_00172]
MLIRLLRTYLRPYRKPILLLVLLQFLQTCATLYLPTLNAHIIDNGVVKGDTGYILSFGALMIGISLVQVVCNTGAVYFGA
RTASAVGRDIRGAIFDRVQSFSAREVGQFGAPSLITRTTNDVQQVQMLTLMTFTLLVSAPIMCVGGIILALGLDVPLSAV
LVAVVPTLTICVTLIVRRLRPLFRSMQVRLDAVNRVLREQITGNRVIRAFVRDEYEKDRFRKANSDLTEMQLRTGNLLAL
MFPVVMTTVNLSSIAVVWFGAHRINSGGMQIGDLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIEEVLDTESSVVP
PLAPVTQLRRHGHLEIRGVGFCYPGAEEPVLKSIDLVARPGETTAVIGSTGSGKSTLLSLVPRLVDATDGEVLVDGVAVS
TIDPVLLAKTVGLVPQKPYLFAGTVATNLRYGNPDATDEELWHALEVAQAKGFVEGLENGLDSPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALSQETAEATVVIVAQRVATIRDADRIVVLDEGRVVGTGRHHELMADN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=654906 OG768_RS29255 WP_266768398.1 6609784..6611517(-) (rcrP) [Streptomyces sp. NBC_00172]
GTGCTCATACGACTTCTGCGGACCTATCTCAGGCCCTACAGGAAACCCATCCTTCTTCTGGTGCTGCTGCAGTTCCTGCA
GACCTGCGCCACCCTCTACCTGCCCACTCTGAACGCGCACATCATCGACAACGGTGTGGTGAAGGGTGACACCGGCTACA
TCCTGTCCTTCGGCGCCCTGATGATCGGGATCTCGCTGGTCCAGGTCGTGTGCAACACCGGTGCCGTCTACTTCGGCGCG
CGCACCGCGTCCGCCGTCGGCCGGGACATCCGGGGTGCCATCTTCGACCGGGTGCAATCGTTCTCGGCCCGCGAGGTCGG
CCAGTTCGGCGCGCCCTCGCTGATCACCCGGACGACCAACGACGTCCAGCAGGTCCAGATGCTGACCCTGATGACGTTCA
CGCTGCTGGTGTCGGCGCCGATCATGTGCGTCGGCGGGATCATCCTGGCGCTCGGTCTCGACGTGCCGCTGTCCGCGGTG
CTGGTCGCCGTGGTGCCGACGCTGACGATCTGCGTGACGCTGATCGTGCGCCGGCTGCGGCCGCTGTTCCGGTCGATGCA
GGTGCGGCTCGACGCGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGCGTGATCCGCGCCTTCGTCCGGGACG
AGTACGAGAAGGACCGGTTCCGGAAGGCCAACAGCGATCTCACCGAGATGCAGCTGAGGACCGGCAACCTGCTCGCGCTG
ATGTTCCCGGTGGTCATGACCACGGTGAACCTGTCGTCGATCGCCGTCGTGTGGTTCGGCGCGCACCGCATCAACAGCGG
CGGGATGCAGATCGGCGATCTGACCGCGTTCCTCGCCTACCTCATGCAGATCGTGATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCGGAGGTCTGTGCCGAGCGCATCGAGGAGGTCCTCGACACCGAGAGCAGTGTCGTGCCG
CCGCTCGCGCCCGTCACCCAGCTGCGCCGGCACGGGCACCTGGAGATCCGCGGGGTCGGGTTCTGCTACCCGGGCGCCGA
GGAACCCGTACTGAAGTCCATCGACCTGGTGGCCCGCCCGGGCGAGACGACGGCCGTGATCGGCTCGACCGGCAGCGGGA
AGTCCACCCTTCTGAGTCTGGTCCCGCGTCTGGTTGACGCGACCGACGGGGAGGTCCTCGTCGACGGGGTCGCCGTGTCG
ACCATCGACCCGGTGCTGCTCGCCAAGACGGTCGGCCTGGTCCCGCAGAAGCCGTACCTCTTCGCGGGCACGGTCGCGAC
CAACCTTCGCTACGGCAATCCCGACGCCACCGACGAGGAGTTGTGGCACGCGCTGGAGGTGGCGCAGGCCAAGGGCTTCG
TCGAGGGGCTGGAGAACGGCCTCGACTCCCCCATCGCCCAGGGCGGCACCAACGTCTCCGGCGGTCAGCGGCAGCGGCTC
GCGATCGCCCGGACGCTGGTGCAGCGGCCGGAGATCTACCTCTTCGACGACTCCTTCTCCGCCCTCGACTACGCGACCGA
CGCGGCGCTGCGGGCGGCGCTCTCGCAGGAGACCGCCGAGGCGACCGTGGTGATCGTGGCGCAGCGGGTGGCCACCATCA
GGGACGCCGACCGCATCGTCGTACTCGACGAGGGCCGGGTCGTGGGGACGGGCCGCCATCACGAACTGATGGCGGACAAC
GAGACTTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCTGCCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(351-498)

ABC transporter transmembrane region (ABC_membrane)

(18-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.071

100

0.393