Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OG768_RS29250 Genome accession   NZ_CP108145
Coordinates   6607856..6609784 (-) Length   642 a.a.
NCBI ID   WP_328934061.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00172     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 6602856..6614784
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG768_RS29235 (OG768_29220) - 6603099..6604376 (+) 1278 WP_328934059.1 FAD-dependent oxidoreductase -
  OG768_RS29240 (OG768_29225) dnaG 6604412..6606316 (+) 1905 WP_328934060.1 DNA primase -
  OG768_RS29245 (OG768_29230) - 6606398..6607708 (+) 1311 WP_328831600.1 RNA polymerase sigma factor -
  OG768_RS29250 (OG768_29235) rcrQ 6607856..6609784 (-) 1929 WP_328934061.1 ABC transporter ATP-binding protein Regulator
  OG768_RS29255 (OG768_29240) rcrP 6609784..6611517 (-) 1734 WP_266768398.1 ABC transporter ATP-binding protein Regulator
  OG768_RS29260 (OG768_29245) - 6611681..6613138 (-) 1458 WP_328934062.1 FGGY family carbohydrate kinase -
  OG768_RS29265 (OG768_29250) - 6613190..6613495 (-) 306 WP_266768396.1 YtxH domain-containing protein -

Sequence

Protein


Download         Length: 642 a.a.        Molecular weight: 69574.26 Da        Isoelectric Point: 6.6718

>NTDB_id=654905 OG768_RS29250 WP_328934061.1 6607856..6609784(-) (rcrQ) [Streptomyces sp. NBC_00172]
MAGPMGRMMAGTGPDARSMDFKVSGKRLIGQFRPERVTIGILLMCVVVSVGLNVVGPKILGNATDLVFAGIIGRQMPAGT
TKAQALQAMRDRGQGSVADMLKSTDFTPGKGIDFTSVGHVLLLALCTFLVAGLLMAVATRMVNRAVNRTMFRLRESVQTK
MSRLPLSYFDKRQRGEVLSRATNDIDNIGQTLQQSMGQLINSLLTIIGVLAMMFWVSWLLALVALVTVPLSFLVATRIGK
RSQPHFVQQWRSTGKLNAHVEEMYTGHNLVKVFGRQDESAQLFAEQNNALYEAGFKAQFNSGIMQPLMMFVSNLNYVLVA
VVGGLRVASGSLSIGDVQAFVQYSRQFSMPLTQVASMANLVQSGVASAERIFELLDAEEQAPDPMPSERPAELRGLVALE
HVSFRYDPDKPLIEDLSLTVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVSGGRITLDGVDIARMSRDELRSGIGMVLQDT
WLFGGSIADNIAYGASREVTRGEIEEAARAAHADRFVRTLPEGYDTVIDDEGTGVSAGEKQLITIARAFLSDPTILVLDE
ATSSVDTRTEVLIQKAMAKLAHGRTSFVIAHRLSTIRDADTILVMENGSIVEQGAHADLLAADGAYARLYKAQFAQAVAE
VD

Nucleotide


Download         Length: 1929 bp        

>NTDB_id=654905 OG768_RS29250 WP_328934061.1 6607856..6609784(-) (rcrQ) [Streptomyces sp. NBC_00172]
ATGGCCGGGCCCATGGGGCGGATGATGGCCGGGACGGGCCCCGACGCCCGTTCGATGGACTTCAAGGTGTCCGGCAAGCG
GCTGATCGGCCAGTTCAGGCCGGAGCGGGTGACCATCGGCATCCTGCTGATGTGTGTGGTGGTGAGCGTCGGGCTGAACG
TGGTCGGGCCGAAGATCCTCGGCAACGCCACCGACCTGGTGTTCGCGGGCATCATCGGGCGGCAGATGCCGGCCGGCACG
ACCAAGGCGCAGGCCCTCCAGGCGATGCGCGACCGCGGCCAGGGTTCGGTCGCGGACATGCTCAAGAGCACGGACTTCAC
GCCGGGCAAGGGCATCGACTTCACCTCGGTGGGTCATGTGCTGCTGCTCGCGCTGTGCACGTTCCTGGTGGCCGGGCTGC
TGATGGCGGTGGCGACCCGGATGGTCAACCGGGCGGTCAACCGGACCATGTTCCGGCTGCGCGAGAGCGTGCAGACGAAG
ATGTCGCGGCTCCCGCTGTCGTACTTCGACAAGCGGCAGCGCGGTGAGGTGCTGTCCCGCGCGACCAACGACATCGACAA
CATCGGGCAGACGCTCCAGCAGTCGATGGGCCAGCTGATCAACTCGCTGCTCACGATCATCGGCGTCCTCGCGATGATGT
TCTGGGTGTCCTGGCTGCTCGCCCTGGTCGCGCTGGTGACCGTGCCGCTGTCGTTCCTCGTCGCCACCCGCATCGGCAAG
CGCTCGCAGCCGCACTTCGTGCAGCAGTGGCGCTCCACCGGCAAGCTCAACGCGCACGTCGAGGAGATGTACACCGGGCA
CAACCTGGTCAAGGTCTTCGGCCGGCAGGACGAGTCGGCGCAGCTGTTCGCCGAGCAGAACAACGCGCTGTACGAGGCGG
GTTTCAAGGCGCAGTTCAACAGCGGGATCATGCAGCCGCTGATGATGTTCGTCTCGAACCTCAACTACGTGCTGGTGGCG
GTGGTGGGCGGCCTGCGCGTCGCGTCCGGTTCGCTTTCCATCGGCGATGTGCAGGCCTTCGTCCAGTACTCGCGCCAGTT
CTCCATGCCGCTGACCCAGGTCGCGTCGATGGCGAACCTGGTCCAGTCAGGCGTCGCCTCGGCCGAGCGGATCTTCGAAC
TCCTCGACGCCGAGGAGCAGGCCCCCGACCCGATGCCGAGCGAACGCCCCGCGGAACTGCGCGGCCTGGTCGCCCTGGAG
CACGTCTCCTTCCGCTACGACCCCGACAAGCCGCTCATCGAGGACCTCTCGCTGACGGTGGAACCGGGCCACACGGTCGC
GATCGTCGGCCCGACGGGGGCCGGCAAGACGACCCTGGTGAACCTCCTCATGCGGTTCTACGAGGTCTCCGGCGGGCGCA
TCACCCTCGACGGCGTGGACATCGCGCGGATGTCCCGGGACGAACTCCGGTCCGGGATCGGCATGGTGCTCCAGGACACC
TGGCTGTTCGGCGGCTCCATCGCGGACAACATCGCGTACGGGGCCTCGCGCGAGGTCACCCGGGGCGAGATCGAGGAGGC
GGCGCGGGCGGCGCACGCCGACCGGTTCGTCCGTACGCTGCCCGAGGGCTACGACACGGTCATCGACGACGAGGGCACGG
GCGTCAGCGCCGGTGAGAAGCAGCTCATCACCATCGCGCGGGCGTTCCTGTCCGACCCGACGATCCTCGTCCTCGACGAG
GCGACGTCCTCCGTGGACACCCGCACAGAGGTGTTGATCCAGAAGGCGATGGCCAAGCTCGCGCACGGCCGCACGTCGTT
CGTGATCGCGCACCGGCTCTCCACGATCCGGGACGCGGACACGATCCTCGTCATGGAGAACGGCTCCATCGTCGAACAGG
GCGCGCACGCGGACCTGTTGGCGGCGGACGGGGCGTATGCGCGGCTGTACAAGGCGCAGTTCGCGCAGGCGGTTGCGGAG
GTCGACTAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(414-563)

ABC transporter transmembrane region (ABC_membrane)

(41-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

40.129

96.262

0.386