Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FOC29_RS25730 Genome accession   NZ_CP091985
Coordinates   2101539..2102915 (+) Length   458 a.a.
NCBI ID   WP_011885162.1    Uniprot ID   I2DNF8
Organism   Burkholderia vietnamiensis strain FDAARGOS_721     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2096539..2107915
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC29_RS25710 (FOC29_25700) - 2097078..2098037 (+) 960 WP_059568354.1 DUF1853 family protein -
  FOC29_RS25715 (FOC29_25705) thiD 2098056..2098865 (-) 810 WP_059568353.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  FOC29_RS25720 (FOC29_25710) lplT 2098933..2100240 (-) 1308 WP_059568352.1 lysophospholipid transporter LplT -
  FOC29_RS25725 (FOC29_25715) alr 2100459..2101529 (+) 1071 WP_226146420.1 alanine racemase -
  FOC29_RS25730 (FOC29_25720) radA 2101539..2102915 (+) 1377 WP_011885162.1 DNA repair protein RadA Machinery gene
  FOC29_RS25735 (FOC29_25725) - 2103053..2103319 (+) 267 WP_014723233.1 DUF2866 domain-containing protein -
  FOC29_RS25740 (FOC29_25730) - 2103526..2105454 (-) 1929 WP_014723232.1 ATP-binding cassette domain-containing protein -
  FOC29_RS25745 (FOC29_25735) - 2105591..2106070 (+) 480 WP_014723231.1 glutathione peroxidase -
  FOC29_RS25750 (FOC29_25740) cls 2106170..2107621 (-) 1452 WP_060092157.1 cardiolipin synthase -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 48844.32 Da        Isoelectric Point: 6.9993

>NTDB_id=654884 FOC29_RS25730 WP_011885162.1 2101539..2102915(+) (radA) [Burkholderia vietnamiensis strain FDAARGOS_721]
MAKQKTVYVCSECGGQTPKWQGQCPSCHAWNTLVESVAESPAAHRFQSLAKRAPVQRLADIEAADVPRFSTGIGEFDRVL
GGGLVPGGVVLIGGDPGIGKSTLLLQSLADIASERRALYISGEESAAQIALRAQRLALLDGGAPVAELKLLAEIQLEKIQ
AAIDTERPDVAVVDSIQTVYSEALTSAPGSVAQVRECAAQLTRIAKQSGTAIIMVGHVTKEGNLAGPRVLEHIVDTVLYF
EGDTHSSFRLVRAFKNRFGAVNELGVFAMTERGLRGVANPSALFLSQHEQVVPGSCVLVTQEGTRPLLVEIQALVDTAHV
PNPRRLAVGLEQNRLAMLLAVLHRHAGIACFDQDVFLNAVGGVKITEPAADLAVLLAIHSSMRNKALPKGLIVFGEVGLA
GEIRPSPRGQERLREAAKLGFTAALIPKANAPKQPIEGLNVMAVERIEQAIDRVRELE

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=654884 FOC29_RS25730 WP_011885162.1 2101539..2102915(+) (radA) [Burkholderia vietnamiensis strain FDAARGOS_721]
GTGGCGAAACAGAAAACCGTCTACGTCTGCAGCGAGTGCGGCGGACAAACCCCGAAATGGCAGGGCCAGTGCCCGTCGTG
CCATGCCTGGAACACGCTCGTCGAGTCGGTCGCGGAATCGCCGGCCGCCCATCGGTTCCAGTCGCTCGCGAAACGCGCGC
CGGTGCAGCGCCTGGCCGACATCGAGGCAGCCGACGTGCCGCGTTTCTCGACTGGCATCGGCGAATTCGACCGCGTGCTG
GGCGGCGGCCTGGTGCCCGGCGGCGTGGTGCTGATCGGCGGCGATCCGGGCATCGGCAAGTCGACGCTGTTGCTGCAGTC
GCTCGCCGACATCGCGAGCGAGCGGCGCGCGCTGTATATCAGCGGCGAGGAGTCGGCCGCGCAGATCGCGTTGCGCGCGC
AGCGGCTCGCGCTGCTCGACGGCGGCGCGCCGGTGGCCGAGTTGAAGCTGCTCGCCGAGATCCAGCTCGAGAAGATCCAG
GCCGCGATCGACACCGAACGGCCCGACGTGGCCGTCGTCGACTCGATCCAGACGGTGTACTCGGAGGCGCTGACTTCCGC
GCCCGGGTCGGTCGCGCAGGTGCGCGAGTGCGCGGCGCAGCTCACGCGCATCGCGAAGCAGTCGGGCACCGCGATCATCA
TGGTCGGCCACGTGACGAAGGAGGGCAATCTCGCGGGCCCGCGCGTGCTCGAGCACATCGTCGACACGGTGCTGTACTTC
GAAGGTGACACCCATTCGTCGTTCCGGCTCGTGCGCGCGTTCAAGAACCGCTTCGGCGCGGTCAACGAGCTCGGCGTGTT
CGCGATGACCGAGCGCGGGCTGCGCGGCGTCGCGAATCCGTCGGCGCTGTTCCTGTCGCAGCATGAGCAGGTCGTGCCCG
GCTCCTGCGTGCTGGTCACGCAGGAGGGGACGCGCCCGCTGCTCGTCGAAATCCAGGCGCTCGTCGATACGGCGCACGTG
CCGAATCCGCGCCGGCTCGCGGTCGGCCTCGAGCAGAACCGGCTCGCGATGCTGCTCGCGGTGCTGCACCGGCACGCGGG
CATCGCGTGCTTCGACCAGGACGTGTTCCTGAATGCGGTGGGCGGCGTGAAGATCACCGAGCCGGCCGCCGACCTCGCGG
TGCTGCTGGCGATCCATTCGTCGATGCGCAACAAGGCGTTGCCGAAGGGGCTGATCGTGTTCGGCGAAGTGGGGCTCGCG
GGCGAGATCCGGCCGTCGCCGCGCGGCCAGGAGCGGCTGCGCGAGGCCGCGAAGCTCGGTTTCACGGCCGCGCTGATTCC
GAAGGCGAATGCGCCGAAGCAGCCGATCGAAGGGCTGAACGTGATGGCCGTCGAGCGCATCGAGCAGGCGATCGACCGCG
TGCGCGAACTCGAATGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(78-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2DNF8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.675

100

0.5
  radA Streptococcus mitis SK321

47.162

100

0.472
  radA Streptococcus pneumoniae Rx1

46.855

100

0.472
  radA Streptococcus pneumoniae D39

46.855

100

0.472
  radA Streptococcus pneumoniae R6

46.855

100

0.472
  radA Streptococcus pneumoniae TIGR4

46.855

100

0.472
  radA Streptococcus mitis NCTC 12261

46.827

99.782

0.467