Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   FOC29_RS21800 Genome accession   NZ_CP091985
Coordinates   1268992..1270497 (-) Length   501 a.a.
NCBI ID   WP_011886056.1    Uniprot ID   -
Organism   Burkholderia vietnamiensis strain FDAARGOS_721     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1263992..1275497
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC29_RS21775 (FOC29_21765) - 1265019..1265657 (-) 639 WP_011886060.1 LON peptidase substrate-binding domain-containing protein -
  FOC29_RS21780 (FOC29_21770) rapZ 1265685..1266593 (-) 909 WP_034192566.1 RNase adapter RapZ -
  FOC29_RS21785 (FOC29_21775) hprK 1266669..1267637 (-) 969 WP_006483133.1 HPr(Ser) kinase/phosphatase -
  FOC29_RS21790 (FOC29_21780) - 1267767..1268279 (-) 513 WP_011886058.1 PTS sugar transporter subunit IIA -
  FOC29_RS21795 (FOC29_21785) hpf 1268474..1268833 (-) 360 WP_011886057.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  FOC29_RS21800 (FOC29_21790) rpoN/rpoN1 1268992..1270497 (-) 1506 WP_011886056.1 RNA polymerase factor sigma-54 Machinery gene
  FOC29_RS21805 (FOC29_21795) lptB 1270660..1271436 (-) 777 WP_011886055.1 LPS export ABC transporter ATP-binding protein -
  FOC29_RS21810 (FOC29_21800) lptA 1271433..1272098 (-) 666 WP_011886054.1 lipopolysaccharide transport periplasmic protein LptA -
  FOC29_RS21815 (FOC29_21805) lptC 1272119..1272733 (-) 615 WP_011886053.1 LPS export ABC transporter periplasmic protein LptC -
  FOC29_RS21820 (FOC29_21810) - 1272737..1273273 (-) 537 WP_011886052.1 KdsC family phosphatase -
  FOC29_RS21825 (FOC29_21815) kdsD 1273273..1274256 (-) 984 WP_014723665.1 arabinose 5-phosphate isomerase KdsD -

Sequence

Protein


Download         Length: 501 a.a.        Molecular weight: 54798.95 Da        Isoelectric Point: 4.8247

>NTDB_id=654880 FOC29_RS21800 WP_011886056.1 1268992..1270497(-) (rpoN/rpoN1) [Burkholderia vietnamiensis strain FDAARGOS_721]
MKASLQLRLSQHLALTPQLQQSIRLLQLSTLELQQEVAMAVAQNPLLESDDEWIASPLRVAADGSLIAQTPPAPNGESGS
MNGSGQSSERAERDEPAATDEYDGYGSGDASDGPQWNLDEFGRSSGASDDDDLPPLQVQEAATSLREHLSAQLRVTQASP
RDRALVMFLIESLDDDGYLTASLDEVLADLPPELEVDCDELNAALALLHSFDPAGVGARSASECLKLQLLRLDPSPTRTL
ALEIVSQHLELLAARDFTRLRKQLKASDDALRDAHALIRSLEPFPGAAYGKAEADYVVPDIIVKKAGQGWLAELNPEVMP
RLRINNLYANILRNSRGDPSTGSLKQQLQEARWLIKNIQQRFDTILRVAQAIVERQKNFFAHGEIAMRPLVLREIADTLG
LHESTVSRVTTGKYMLTPFGTLEFKYFFGSHVSTDTGGAASSTAIRALIKQLIGAEDPKSPLSDSRIAELLAEQGFVVAR
RTVAKYREALRIPAVNLRKSL

Nucleotide


Download         Length: 1506 bp        

>NTDB_id=654880 FOC29_RS21800 WP_011886056.1 1268992..1270497(-) (rpoN/rpoN1) [Burkholderia vietnamiensis strain FDAARGOS_721]
ATGAAAGCCAGCCTCCAACTCCGCCTGTCGCAACACCTTGCGTTGACGCCGCAGCTGCAGCAGTCGATTCGGCTTTTGCA
GCTGTCGACGCTCGAGCTGCAGCAGGAAGTCGCGATGGCCGTCGCGCAGAATCCGCTGCTGGAAAGCGACGACGAATGGA
TCGCGAGCCCGCTGCGCGTCGCAGCCGACGGATCGCTGATCGCGCAGACGCCGCCCGCCCCGAACGGCGAGTCCGGCAGC
ATGAACGGCAGCGGCCAGTCGAGCGAGCGCGCCGAACGCGACGAGCCGGCCGCCACCGACGAATACGACGGCTATGGCTC
GGGCGACGCGAGCGATGGCCCGCAATGGAATCTCGACGAATTCGGCCGCTCGAGCGGCGCGTCGGACGACGACGATCTCC
CGCCGCTGCAGGTGCAGGAAGCCGCCACGTCGCTGCGCGAGCATCTGTCCGCGCAGCTGCGCGTCACGCAGGCCAGTCCG
CGCGATCGCGCGCTCGTAATGTTCCTGATCGAATCGCTCGACGACGACGGCTACCTGACCGCGTCGCTCGACGAAGTGCT
GGCCGACCTGCCGCCCGAACTCGAAGTCGACTGCGACGAGCTGAATGCGGCGCTCGCGCTGCTGCACAGCTTCGATCCGG
CCGGCGTCGGCGCGCGCTCGGCGTCCGAATGCCTGAAGCTGCAACTGCTGCGGCTCGATCCGTCCCCGACCCGCACGCTC
GCGCTGGAAATCGTCTCGCAGCATCTCGAGTTGCTCGCCGCGCGCGACTTCACGCGGCTGCGCAAGCAACTGAAGGCGAG
CGACGACGCGCTGCGCGACGCGCACGCGCTGATCCGCTCGCTGGAGCCGTTCCCCGGCGCGGCCTACGGCAAGGCCGAGG
CCGACTACGTGGTACCCGACATCATCGTGAAGAAGGCCGGCCAGGGCTGGCTCGCGGAGCTCAATCCGGAGGTGATGCCG
CGCCTGCGGATCAACAACCTGTACGCGAACATTCTGCGCAACAGCCGGGGCGATCCGTCGACCGGATCGTTGAAGCAACA
GCTGCAGGAAGCACGCTGGCTGATCAAGAATATCCAGCAGCGATTCGACACGATCCTGCGTGTCGCACAGGCTATTGTCG
AACGTCAGAAGAACTTCTTTGCGCACGGCGAAATTGCCATGCGCCCCTTGGTTTTGCGGGAAATAGCTGATACGCTGGGC
CTACACGAGTCGACTGTCAGCCGTGTGACAACCGGTAAGTACATGCTGACCCCGTTCGGGACGCTGGAGTTCAAGTACTT
CTTCGGATCGCACGTTTCGACCGACACCGGAGGCGCCGCATCGTCGACCGCCATCCGAGCCCTGATCAAGCAACTGATAG
GAGCTGAAGACCCAAAGTCGCCACTTTCGGACAGCCGCATTGCCGAGCTGCTGGCAGAACAGGGATTCGTGGTCGCGCGC
CGCACGGTCGCGAAGTATCGCGAAGCCCTCAGGATCCCGGCAGTGAATCTGCGCAAATCTCTTTAA

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(137-328)

Sigma-54, DNA binding domain (Sigma54_DBD)

(344-499)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

67.836

100

0.695