Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   LXB09_RS06465 Genome accession   NZ_CP091981
Coordinates   1398392..1400200 (-) Length   602 a.a.
NCBI ID   WP_135014195.1    Uniprot ID   -
Organism   Lactobacillus johnsonii strain MR1     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1393392..1405200
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXB09_RS06440 (LXB09_06440) - 1393725..1394003 (+) 279 WP_011162513.1 ArsR/SmtB family transcription factor -
  LXB09_RS06445 (LXB09_06445) - 1394304..1395203 (+) 900 WP_011162512.1 metal ABC transporter solute-binding protein, Zn/Mn family -
  LXB09_RS06450 (LXB09_06450) - 1395240..1395899 (+) 660 WP_135014197.1 metal ABC transporter ATP-binding protein -
  LXB09_RS06455 (LXB09_06455) - 1395899..1396690 (+) 792 WP_011162511.1 metal ABC transporter permease -
  LXB09_RS06460 (LXB09_06460) - 1396812..1398323 (+) 1512 WP_167739982.1 L-lactate permease -
  LXB09_RS06465 (LXB09_06465) pepF 1398392..1400200 (-) 1809 WP_135014195.1 oligoendopeptidase F Regulator
  LXB09_RS06470 (LXB09_06470) - 1400364..1401488 (+) 1125 WP_135014194.1 LCP family protein -
  LXB09_RS06475 (LXB09_06475) - 1401593..1401865 (-) 273 WP_135014193.1 hypothetical protein -
  LXB09_RS06480 (LXB09_06480) - 1402090..1402473 (+) 384 WP_011162506.1 hypothetical protein -
  LXB09_RS06485 (LXB09_06485) - 1402473..1404020 (+) 1548 WP_011162505.1 ABC-F family ATP-binding cassette domain-containing protein -
  LXB09_RS06490 (LXB09_06490) - 1404037..1404819 (+) 783 WP_086875185.1 threonine/serine exporter family protein -

Sequence

Protein


Download         Length: 602 a.a.        Molecular weight: 68660.43 Da        Isoelectric Point: 4.6193

>NTDB_id=654868 LXB09_RS06465 WP_135014195.1 1398392..1400200(-) (pepF) [Lactobacillus johnsonii strain MR1]
MALPTRNEVSDDLKWDLSRVFKDDQEWEKEYNRVATEIKNLDRFKGNLAKSGQDLYEGITEILSVNRRLEKVYVYATMSS
DVDTSNTHYLGLVAKAQSLANQMSAAISFVDPEILSIPEETLAKFMQDEPRLKEYQHRLEQITKKRPHTLPASEEKIIAA
AGDAMGTSANTFNVLTNSDMEYGYVQDEDGEMVQLSDGLYSLLIQSQDRNVRKNAFDVMYASYGQFENSLASTLSGEVKA
HNFNAQVHKYNSAREAALSENGVPTAVYDTLVKEVNSHLNLLHRYVSLRKKILGLSDLQMYDMYVPLTGEPSLSYNFEEA
KNEARRALAPLGKDYLEHVDYIFNNRVIDVVESQNKVTGAYSGGSYDTDPYELLNWEDNLDSLYTLVHETGHSVHSWYTR
NTQPYVYGDYPIFVAEIASTTNENILTEYFLDKITDPKTRAFVLNHYLDSFKGTLFRQTQFAEFEQFIHEADANGQPLTA
DVLDEFYGNLNQRYYGDSVEPGGEIAKEWARIPHFYYNFYVYQYATGFAAATALTNNVVHGTDKERTAYINFLKAGSSDY
PTEIMKCAGVDMTKADYLKDAFNTFEKRLNEFEKIVDELKTI

Nucleotide


Download         Length: 1809 bp        

>NTDB_id=654868 LXB09_RS06465 WP_135014195.1 1398392..1400200(-) (pepF) [Lactobacillus johnsonii strain MR1]
ATGGCTCTTCCAACAAGAAATGAAGTATCTGATGATCTCAAATGGGATCTTAGTCGTGTTTTTAAAGACGATCAGGAATG
GGAAAAAGAATATAATCGGGTCGCAACCGAAATTAAAAATTTAGATAGATTTAAGGGAAATCTTGCTAAATCTGGTCAAG
ATTTATATGAAGGAATTACAGAAATTTTATCTGTAAATCGTCGTTTAGAAAAAGTGTACGTTTATGCTACTATGTCAAGC
GACGTTGATACTAGTAATACTCATTATCTAGGCCTTGTTGCTAAAGCTCAAAGCTTAGCTAACCAAATGAGTGCTGCTAT
CTCCTTTGTCGATCCTGAAATTTTATCTATCCCAGAAGAGACACTTGCTAAATTTATGCAAGATGAGCCCCGTTTAAAAG
AGTATCAACATCGACTTGAACAAATTACTAAGAAACGTCCTCATACTTTACCAGCAAGTGAAGAAAAAATTATTGCCGCT
GCTGGAGATGCAATGGGAACTTCCGCTAATACTTTCAATGTTTTAACTAATTCTGATATGGAATACGGCTATGTTCAAGA
TGAAGACGGAGAGATGGTCCAATTATCTGATGGCTTATATTCACTTCTAATTCAGTCACAAGATAGAAATGTTCGCAAAA
ATGCATTTGATGTTATGTATGCAAGCTATGGCCAGTTTGAAAATAGTCTCGCTTCAACTTTATCAGGTGAAGTAAAAGCC
CACAATTTTAATGCTCAAGTACATAAATATAATTCAGCTCGAGAGGCTGCTTTAAGTGAAAATGGCGTACCAACAGCTGT
TTACGATACATTGGTTAAAGAGGTAAATAGTCACCTCAACTTACTTCATCGCTACGTTAGTTTAAGAAAAAAGATTTTAG
GTCTTTCTGATTTACAAATGTATGATATGTATGTTCCATTAACAGGTGAGCCCAGTCTTTCTTATAACTTTGAAGAAGCA
AAAAATGAAGCTAGACGAGCCTTAGCGCCATTAGGAAAAGATTACCTCGAACATGTTGATTACATCTTTAATAATCGTGT
AATTGATGTGGTTGAAAGCCAAAATAAGGTAACAGGCGCTTATTCTGGTGGTTCCTATGATACTGATCCATATGAATTAT
TAAATTGGGAGGATAATCTTGATTCTCTATATACTCTAGTTCATGAAACTGGACACTCAGTGCATTCCTGGTATACAAGA
AATACTCAACCATATGTATATGGAGACTACCCAATTTTTGTTGCTGAAATTGCATCAACAACTAATGAAAATATTTTAAC
TGAATACTTCTTAGATAAGATTACTGATCCTAAAACACGCGCATTTGTTTTGAATCACTATCTTGATTCATTCAAGGGCA
CACTCTTCCGTCAAACACAATTTGCAGAATTTGAGCAGTTTATTCATGAAGCTGACGCAAATGGTCAACCATTAACTGCC
GATGTTCTTGATGAATTTTACGGCAATTTAAACCAAAGATATTACGGTGATAGTGTAGAACCGGGCGGAGAGATTGCTAA
AGAATGGGCCCGTATTCCTCATTTCTATTACAACTTTTATGTTTACCAATATGCAACAGGCTTTGCTGCTGCTACAGCTC
TCACAAATAATGTTGTTCATGGTACTGACAAAGAACGTACCGCTTATATTAATTTCTTAAAGGCTGGCTCTTCAGATTAT
CCAACAGAGATAATGAAATGTGCCGGTGTCGATATGACAAAGGCCGATTACTTAAAAGACGCATTTAATACTTTTGAAAA
ACGACTTAATGAGTTTGAAAAAATCGTTGATGAATTGAAAACAATCTAG

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(113-181)

Peptidase family M3 (Peptidase_M3)

(203-583)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.178

98.671

0.505