Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   L6V94_RS14880 Genome accession   NZ_CP091978
Coordinates   3110994..3111590 (+) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae isolate JNQH373     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3105994..3116590
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6V94_RS14855 (L6V94_14855) - 3106186..3107943 (-) 1758 WP_014907886.1 AAA family ATPase -
  L6V94_RS14860 (L6V94_14860) matP 3108129..3108581 (+) 453 WP_002898404.1 macrodomain Ter protein MatP -
  L6V94_RS14865 (L6V94_14865) ompA 3108713..3109783 (-) 1071 WP_002898408.1 porin OmpA -
  L6V94_RS14870 (L6V94_14870) sulA 3110136..3110645 (-) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  L6V94_RS14875 (L6V94_14875) - 3110688..3110903 (-) 216 WP_009485781.1 hypothetical protein -
  L6V94_RS14880 (L6V94_14880) sxy/tfoX 3110994..3111590 (+) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  L6V94_RS14885 (L6V94_14885) yccS 3111604..3113739 (-) 2136 WP_002898422.1 YccS family putative transporter -
  L6V94_RS14890 (L6V94_14890) - 3113757..3114203 (-) 447 WP_014907884.1 YccF domain-containing protein -
  L6V94_RS14895 (L6V94_14895) helD 3114328..3116382 (+) 2055 WP_014907883.1 DNA helicase IV -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=654852 L6V94_RS14880 WP_004179217.1 3110994..3111590(+) (sxy/tfoX) [Klebsiella pneumoniae isolate JNQH373]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=654852 L6V94_RS14880 WP_004179217.1 3110994..3111590(+) (sxy/tfoX) [Klebsiella pneumoniae isolate JNQH373]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTATTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51