Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OHT61_RS24270 Genome accession   NZ_CP108143
Coordinates   5517809..5518606 (-) Length   265 a.a.
NCBI ID   WP_329041125.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00178     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5512809..5523606
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHT61_RS24255 (OHT61_24245) - 5512846..5513541 (+) 696 WP_329041122.1 GNAT family N-acetyltransferase -
  OHT61_RS24260 (OHT61_24250) - 5513602..5515446 (+) 1845 WP_329041123.1 IucA/IucC family siderophore biosynthesis protein -
  OHT61_RS24265 (OHT61_24255) - 5515497..5517464 (+) 1968 WP_329041124.1 ATP-dependent DNA helicase -
  OHT61_RS24270 (OHT61_24260) dinR/lexA 5517809..5518606 (-) 798 WP_329041125.1 transcriptional repressor LexA Regulator
  OHT61_RS24275 (OHT61_24265) nrdR 5519161..5519676 (+) 516 WP_329041126.1 transcriptional regulator NrdR -
  OHT61_RS24280 (OHT61_24270) - 5519824..5522733 (+) 2910 WP_329041129.1 vitamin B12-dependent ribonucleotide reductase -
  OHT61_RS24285 (OHT61_24275) - 5522953..5523486 (-) 534 WP_329041130.1 TerD family protein -

Sequence

Protein


Download         Length: 265 a.a.        Molecular weight: 28788.59 Da        Isoelectric Point: 7.0792

>NTDB_id=654835 OHT61_RS24270 WP_329041125.1 5517809..5518606(-) (dinR/lexA) [Streptomyces sp. NBC_00178]
MTTTADSAAITAQDHRSQSRLEPVHAMNDAVMNTEGPEPSRPARSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGY
PPSMREIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSNQPTDTTGKPAASYVPLVGRIAAGGPILA
EESVEDVFPLPRQLVGDGELFVLKVVGDSMIEAAIMDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPH
NSAYQPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 798 bp        

>NTDB_id=654835 OHT61_RS24270 WP_329041125.1 5517809..5518606(-) (dinR/lexA) [Streptomyces sp. NBC_00178]
GTGACCACCACCGCAGACAGTGCCGCCATCACTGCCCAGGACCACCGCTCCCAGAGCCGACTTGAGCCGGTGCATGCCAT
GAATGACGCAGTCATGAACACGGAGGGGCCCGAGCCCTCGCGGCCCGCACGCTCCTTGCCCGGCCGCCCACCCGGGATCC
GGGCGGACAGTTCCGGGCTCACGGACCGGCAGCGGCGTGTGATCGAGGTGATCCGGGATTCCGTGCAGCGGCGGGGCTAT
CCCCCGTCGATGCGGGAGATCGGCCAGGCGGTGGGCCTGTCCAGCACGTCGTCGGTCGCCCACCAGCTGATGGCACTGGA
GCGCAAGGGCTTCCTGCGCCGCGACCCCCACAGGCCGCGCGCCTACGAGGTCCGGGGCTCGGACCAGCCCAGCAACCAGC
CCACCGACACCACCGGCAAGCCGGCCGCGTCCTACGTGCCGCTGGTCGGCCGGATCGCGGCGGGTGGGCCGATCCTGGCC
GAGGAGTCCGTCGAGGACGTCTTCCCGCTCCCCCGCCAGCTCGTCGGTGACGGTGAGCTCTTCGTGCTGAAGGTCGTCGG
CGACTCGATGATCGAAGCGGCGATCATGGACGGTGACTGGGTAACGGTCCGACGTCAGCCCGTGGCGGAGAACGGCGACA
TCGTGGCGGCCATGCTCGACGGCGAGGCCACCGTCAAGCGCTTCAAGCGCGAGGACGGCCATGTGTGGCTGCTCCCGCAC
AACTCGGCCTACCAGCCCATCCCCGGCGACGAGGCGACGATCCTGGGCAAGGTCGTGGCGGTACTGCGGCGGGTGTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(58-121)

Peptidase S24-like (Peptidase_S24)

(147-259)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.226

80

0.37