Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   OHT61_RS11270 Genome accession   NZ_CP108143
Coordinates   2622555..2624786 (-) Length   743 a.a.
NCBI ID   WP_329037414.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00178     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2617555..2629786
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHT61_RS11260 (OHT61_11250) - 2617960..2620395 (+) 2436 WP_329037409.1 heavy metal translocating P-type ATPase -
  OHT61_RS11265 (OHT61_11255) - 2621059..2622357 (-) 1299 WP_145801439.1 citrate synthase -
  OHT61_RS11270 (OHT61_11260) recD/recD2/recDB 2622555..2624786 (-) 2232 WP_329037414.1 ATP-dependent RecD-like DNA helicase Machinery gene
  OHT61_RS11275 (OHT61_11265) - 2624991..2625497 (+) 507 WP_329037416.1 DUF6584 family protein -
  OHT61_RS11280 (OHT61_11270) - 2625607..2626347 (+) 741 WP_329037417.1 class I SAM-dependent methyltransferase -
  OHT61_RS11285 (OHT61_11275) - 2626708..2627442 (+) 735 WP_329037418.1 class I SAM-dependent methyltransferase -
  OHT61_RS11290 (OHT61_11280) - 2627700..2628533 (-) 834 WP_329037420.1 sugar phosphate isomerase/epimerase family protein -
  OHT61_RS11295 (OHT61_11285) - 2628530..2629672 (-) 1143 WP_329037422.1 dihydrodipicolinate synthase family protein -

Sequence

Protein


Download         Length: 743 a.a.        Molecular weight: 80209.68 Da        Isoelectric Point: 6.4595

>NTDB_id=654801 OHT61_RS11270 WP_329037414.1 2622555..2624786(-) (recD/recD2/recDB) [Streptomyces sp. NBC_00178]
MSNTAVLEGVLERITYANEENGYTVARVDTGRGAGDLLTVVGSLLGAQPGESLRMEGRWGSHPQFGKQFQVDNYTTVLPA
TIQGIRRYLGSGLIKGIGPVMADRITTHFGVDTLDIIEQHPKRLVEVPGLGPKRTKMIAAAWEEQKAIKEVMVFLQTVGV
STSIAVRIYKKYEDASISVVKNQPYRLAADVWGIGFLTADRIAQAVGIPHDSPERVKAGLQYALSQSTDQGHCFLPEERL
IADGVKLLQVDTGLVIDCLAELAEDPEGVVRERVPGPEDGQPVTAVYLVPFHRAEISLAAQVQRLLRTPEDRMPAFQDVD
WDRALSWLAGRTGATLAPEQEAAVRLALSRKVAVLTGGPGCGKSFTVRSVVELARARNATVVLAAPTGRAAKRLSELTGA
EASTVHRLLELKPGGDAAYDRDRPLDADLVVVDEASMLDLLLANKLVKAVAPGAHLLLVGDVDQLPSVGAGEVLRDLLAE
GGPVPAVRLTTIFRQAQKSGVVTNAHRINSGVPPLTQGLDDFFLFVEDETEDAGVLAVDVAARRIPARFGLNPRRDVQVL
APMHRGPAGAGHLNGLLQQAITPGRPGLPEKRFGGRVFRVGDKVTQIRNNYDKGENGVFNGTVGIVTALDPDEQRLTVLT
DEDEEIAYDFDELDELAHAYAMTIHRSQGSEYPAVVVPVTTSAWMMLQRNLLYTAVTRAKKLVVLVGSRKAIGQAVRTVS
AGRRCTALDFRLRSGTAADFPEK

Nucleotide


Download         Length: 2232 bp        

>NTDB_id=654801 OHT61_RS11270 WP_329037414.1 2622555..2624786(-) (recD/recD2/recDB) [Streptomyces sp. NBC_00178]
ATGTCCAACACGGCCGTGCTCGAAGGTGTCCTGGAGCGGATCACCTACGCCAACGAGGAGAACGGCTACACCGTCGCCCG
CGTCGACACCGGCCGCGGGGCCGGTGACCTGCTCACCGTCGTCGGCTCGCTGCTCGGTGCCCAGCCCGGTGAGTCCCTGC
GGATGGAGGGGCGTTGGGGTTCCCACCCGCAGTTCGGCAAGCAGTTCCAGGTCGACAACTACACGACGGTCCTCCCCGCC
ACGATCCAGGGCATCCGCCGCTACCTCGGCTCGGGCCTGATCAAGGGCATCGGCCCGGTCATGGCCGACCGCATCACCAC
CCACTTCGGCGTCGACACCCTGGACATCATCGAGCAGCACCCGAAGCGGCTCGTGGAGGTGCCCGGACTCGGGCCGAAGC
GGACGAAGATGATCGCCGCCGCCTGGGAGGAACAGAAGGCGATCAAGGAGGTCATGGTCTTCCTCCAGACCGTCGGTGTG
TCCACCTCCATCGCGGTCCGCATCTACAAGAAGTACGAGGACGCCTCGATCTCCGTCGTGAAGAACCAGCCCTACCGGCT
GGCCGCCGACGTCTGGGGCATCGGCTTCCTCACCGCCGACCGCATCGCCCAGGCCGTCGGCATCCCGCACGACAGCCCGG
AGCGGGTCAAGGCCGGACTCCAGTACGCGCTGTCGCAGTCCACCGACCAGGGCCACTGCTTCCTGCCCGAGGAGCGGCTC
ATCGCGGACGGGGTGAAGCTCCTCCAGGTGGACACCGGGCTCGTCATCGACTGCCTCGCCGAACTCGCCGAGGATCCGGA
GGGAGTCGTGCGCGAGAGGGTGCCGGGACCCGAGGACGGGCAGCCCGTCACCGCCGTGTACCTGGTGCCGTTCCACCGCG
CCGAGATCTCCCTCGCCGCCCAGGTGCAGCGCCTGCTGCGCACGCCGGAGGACCGGATGCCGGCGTTCCAGGACGTCGAC
TGGGACAGGGCGCTGAGCTGGCTCGCCGGGCGTACGGGCGCGACGCTCGCCCCCGAGCAGGAGGCCGCCGTCCGGCTCGC
GCTCAGCAGGAAGGTCGCCGTCCTCACCGGCGGCCCCGGCTGCGGGAAGTCGTTCACCGTCCGCTCCGTGGTCGAACTGG
CCCGCGCCCGGAACGCCACGGTGGTGCTGGCCGCCCCCACCGGGCGGGCGGCGAAGCGTCTGTCCGAGCTGACGGGCGCC
GAGGCGTCGACCGTGCACCGGCTCCTGGAGCTGAAGCCCGGCGGGGACGCCGCCTACGACCGGGACCGGCCGCTGGACGC
CGATCTGGTCGTCGTCGACGAGGCCTCGATGCTGGATCTGCTGCTCGCCAACAAGCTCGTCAAGGCGGTGGCACCCGGTG
CCCATCTCCTGCTGGTCGGCGACGTGGACCAGCTTCCCTCGGTCGGCGCCGGGGAGGTGCTGAGGGATCTGCTCGCCGAG
GGCGGCCCCGTCCCCGCCGTCCGGCTGACGACCATCTTCCGGCAGGCCCAGAAGTCCGGCGTCGTGACCAACGCCCACCG
GATCAACTCCGGAGTGCCGCCCCTGACGCAGGGGCTGGACGACTTCTTCCTGTTCGTCGAGGACGAGACGGAGGACGCCG
GCGTCCTCGCCGTCGACGTCGCCGCCCGCCGCATCCCCGCCAGGTTCGGTCTGAACCCACGCCGTGACGTGCAGGTCCTC
GCCCCGATGCACCGCGGCCCGGCGGGCGCCGGCCATCTCAACGGACTTCTCCAGCAGGCCATCACCCCTGGACGCCCGGG
CCTGCCCGAGAAGCGGTTCGGAGGCCGGGTCTTCCGGGTAGGCGACAAGGTGACGCAGATCAGGAACAACTACGACAAAG
GAGAGAACGGTGTCTTCAACGGGACGGTCGGCATCGTCACCGCCCTCGACCCGGACGAGCAGAGGCTGACGGTCCTGACG
GACGAGGACGAGGAGATCGCGTACGACTTCGACGAACTGGACGAGCTGGCCCACGCCTACGCGATGACCATCCACCGCTC
GCAGGGCAGCGAGTACCCGGCGGTGGTCGTCCCGGTCACCACCAGCGCCTGGATGATGCTCCAGCGGAACCTGCTCTACA
CCGCCGTGACCAGGGCCAAGAAGCTTGTCGTGCTGGTCGGTTCGCGCAAGGCCATCGGCCAGGCGGTCCGCACCGTTTCC
GCAGGCAGACGCTGTACGGCACTGGATTTCCGGCTCCGGAGCGGTACGGCCGCAGACTTCCCGGAAAAATGA

Domains

Predicted by InterProScan.

AAA domain (AAA_30)

(335-514)

Helix-hairpin-helix containing domain (HHH_RecD2)

(144-234)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(658-706)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(573-638)

Helix-hairpin-helix domain (HHH_5)

(94-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

35.125

100

0.361