Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   L3V77_RS16140 Genome accession   NZ_CP091975
Coordinates   3534643..3535647 (+) Length   334 a.a.
NCBI ID   WP_195704551.1    Uniprot ID   -
Organism   Vibrio sp. DW001     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3529643..3540647
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L3V77_RS16120 (L3V77_16100) metJ 3529812..3530132 (+) 321 WP_195704547.1 met regulon transcriptional regulator MetJ -
  L3V77_RS16125 (L3V77_16105) - 3530289..3531548 (-) 1260 WP_275135034.1 malic enzyme-like NAD(P)-binding protein -
  L3V77_RS16130 (L3V77_16110) rpmE 3531726..3531941 (-) 216 WP_195704549.1 50S ribosomal protein L31 -
  L3V77_RS16135 (L3V77_16115) priA 3532261..3534462 (+) 2202 WP_275135035.1 primosomal protein N' -
  L3V77_RS16140 (L3V77_16120) cytR 3534643..3535647 (+) 1005 WP_195704551.1 DNA-binding transcriptional regulator CytR Regulator
  L3V77_RS16145 (L3V77_16125) - 3535779..3536327 (+) 549 WP_275135036.1 SPOR domain-containing protein -
  L3V77_RS16150 (L3V77_16130) hslV 3536462..3536980 (+) 519 WP_275135037.1 ATP-dependent protease subunit HslV -
  L3V77_RS16155 (L3V77_16135) hslU 3537010..3538344 (+) 1335 WP_195704554.1 HslU--HslV peptidase ATPase subunit -
  L3V77_RS16160 (L3V77_16140) - 3538445..3539362 (+) 918 WP_275135038.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  L3V77_RS16165 (L3V77_16145) rraA 3539440..3539979 (+) 540 WP_275135039.1 ribonuclease E activity regulator RraA -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 36714.33 Da        Isoelectric Point: 8.3220

>NTDB_id=654801 L3V77_RS16140 WP_195704551.1 3534643..3535647(+) (cytR) [Vibrio sp. DW001]
MATMKDVAQLAGVSTATVSRALMNPEKVSASTRKRVEDAVLEAGYSPNSLARNLRRNESKTIITIVPDICDPYFTEIIRG
IEDAAMEHGYLVLLGDSGKQQKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPLVMACEYAPELELPTVHIDN
LTSAFEAVNYLTQMGHKKIAQISGPEKAALCKFRHQGYQQALRRAGIALNSTYTTQSNFTFEGGAKALRKLLSLPDAPTA
IFCHNDTMAIGAIQEAKKLGLRVPQDLSVVGFDDIQFSQYCDPPLTTVSQPRYEIGRQAMLMMLELLKGRDVRAGSRLLE
TKLVIRNSAAPPRA

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=654801 L3V77_RS16140 WP_195704551.1 3534643..3535647(+) (cytR) [Vibrio sp. DW001]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCGGGTGTTTCAACCGCTACGGTCTCTCGCGCTTTAATGAACCCAGAAAA
AGTTTCTGCGTCAACTAGAAAACGTGTAGAAGACGCTGTACTAGAAGCTGGATATTCCCCAAACTCTTTAGCTCGAAATC
TCCGTAGGAATGAATCAAAAACAATTATCACCATCGTTCCCGATATTTGTGACCCATATTTTACAGAGATCATTCGTGGT
ATTGAAGACGCAGCGATGGAACATGGTTATCTAGTTCTACTTGGTGATAGCGGCAAACAGCAAAAAAGAGAAAGCTCTTT
CGTTAATCTGGTTTTTACTAAACAAGCTGACGGTATGTTACTGCTTGGTACCGATTTACCATTCGATGTCAGTAAACCCG
AACAAAAAAACCTGCCTCCTCTGGTAATGGCTTGTGAATACGCTCCGGAATTAGAACTACCAACCGTGCATATTGATAAC
TTAACATCGGCATTTGAAGCTGTTAATTATCTAACCCAAATGGGTCACAAAAAAATTGCGCAAATTTCTGGTCCAGAAAA
GGCAGCGTTATGTAAGTTCCGACATCAAGGTTATCAGCAAGCTTTACGTAGAGCCGGAATAGCACTCAATTCAACTTACA
CCACTCAAAGTAATTTTACCTTTGAAGGTGGTGCTAAAGCACTTAGAAAACTACTTTCATTACCGGATGCGCCAACAGCC
ATATTTTGCCACAACGATACCATGGCGATTGGTGCAATACAGGAAGCGAAAAAACTGGGCTTGCGTGTGCCTCAAGATCT
GTCCGTGGTTGGTTTTGATGATATTCAATTCTCACAATATTGTGATCCTCCATTAACCACGGTTTCTCAACCTCGTTATG
AGATTGGGCGCCAAGCAATGTTAATGATGCTAGAACTACTTAAAGGTAGAGATGTAAGAGCGGGTTCAAGATTACTTGAG
ACAAAACTCGTTATTAGAAATAGCGCTGCTCCCCCTAGAGCCTAG

Domains

Predicted by InterproScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-328)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

89.157

99.401

0.886
  cytR Vibrio parahaemolyticus RIMD 2210633

87.688

99.701

0.874