Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OHT61_RS10220 Genome accession   NZ_CP108143
Coordinates   2358285..2359361 (-) Length   358 a.a.
NCBI ID   WP_329043190.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00178     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 2353285..2364361
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHT61_RS10210 (OHT61_10200) rcrP 2354571..2356304 (+) 1734 WP_329037071.1 ABC transporter ATP-binding protein Regulator
  OHT61_RS10215 (OHT61_10205) rcrQ 2356304..2358229 (+) 1926 WP_329037073.1 ABC transporter ATP-binding protein Regulator
  OHT61_RS10220 (OHT61_10210) rpoS 2358285..2359361 (-) 1077 WP_329043190.1 RNA polymerase sigma factor Regulator
  OHT61_RS10225 (OHT61_10215) dnaG 2359540..2361447 (-) 1908 WP_329037075.1 DNA primase -
  OHT61_RS10230 (OHT61_10220) - 2361544..2362803 (-) 1260 WP_329037077.1 FAD-dependent oxidoreductase -
  OHT61_RS10235 (OHT61_10225) - 2362922..2364250 (-) 1329 WP_329037080.1 deoxyguanosinetriphosphate triphosphohydrolase -

Sequence

Protein


Download         Length: 358 a.a.        Molecular weight: 40365.99 Da        Isoelectric Point: 6.2832

>NTDB_id=654797 OHT61_RS10220 WP_329043190.1 2358285..2359361(-) (rpoS) [Streptomyces sp. NBC_00178]
MQTRTAPTTTEHVPAIPAQNRASRHPEAAGTPESVLEEPVEPPRPPEPRSRPEAGGPSSDLFRQYLREIGRIPLLSAAEE
VELARRVEAGLFAEERLASTPDPDTRLAVDLDRLVVMGRMAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIR
AVEKFDYARGYKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRMLQERGYEPTPEEVAAQLDLTPERV
GEVLRLAQEPVSLHAPVGEEDDVAFGDLIEDGDAASPVESAAFLLLRRHLETVLSTLGERERKVVQLRYGLDDGRPRTLE
EIGRIFGVTRERIRQIESKTLDKLRDHAYADQLRGYLD

Nucleotide


Download         Length: 1077 bp        

>NTDB_id=654797 OHT61_RS10220 WP_329043190.1 2358285..2359361(-) (rpoS) [Streptomyces sp. NBC_00178]
GTGCAGACCCGGACCGCGCCGACCACGACCGAGCACGTCCCGGCGATCCCCGCGCAGAACCGGGCCTCACGACACCCGGA
GGCGGCGGGCACGCCCGAATCGGTACTGGAGGAACCGGTGGAGCCCCCGCGGCCCCCGGAGCCGCGGAGCCGCCCGGAGG
CGGGCGGCCCGTCCTCCGACCTGTTCCGCCAGTACTTACGCGAGATCGGGCGGATACCGCTGCTGAGCGCGGCCGAGGAG
GTCGAACTCGCCCGCCGCGTCGAGGCCGGGCTCTTCGCCGAGGAGCGCCTCGCGAGCACCCCCGACCCCGACACCCGGCT
CGCCGTCGATCTGGACCGGCTCGTCGTCATGGGGCGGATGGCCAAACGCCGGCTGATCGAGGCCAACCTCCGCCTCGTCG
TCTCCGTGGCGAAGCGCTACGTCGGCCGCGGCCTGACCATGCTCGACCTGGTGCAGGAGGGAAACCTCGGCCTGATCAGG
GCGGTCGAGAAGTTCGACTACGCCCGGGGCTACAAGTTCTCGACGTACGCGACCTGGTGGATCCGCCAGGCCATGTCACG
GGCCCTGGCGGACCAGGCCAGGACCATAAGGGTCCCGGTGCACGTCGTCGAACTGATCAACCGGGTCGTCCGCGTCCAGC
GCCGGATGCTCCAGGAGCGCGGCTACGAGCCGACCCCCGAGGAGGTCGCGGCCCAGCTGGACCTGACCCCCGAACGCGTC
GGTGAGGTCCTGCGGCTCGCCCAGGAACCCGTCTCCCTGCACGCCCCCGTGGGCGAGGAGGACGACGTCGCCTTCGGGGA
CCTCATCGAGGACGGCGACGCCGCGTCCCCCGTCGAGTCGGCCGCCTTCCTCCTCCTGCGCCGGCACCTGGAGACGGTCC
TGTCCACCCTCGGGGAACGTGAGCGGAAGGTCGTCCAGTTGCGCTACGGGCTGGACGACGGCAGGCCCCGCACGCTCGAG
GAGATCGGGAGGATCTTCGGCGTGACGCGCGAACGCATCCGCCAGATCGAGTCCAAGACGCTCGACAAACTGCGGGACCA
CGCCTACGCCGACCAGCTGCGCGGCTACCTGGACTGA

Domains

Predicted by InterProScan.

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(60-93)

Sigma-70, region 4 (Sigma70_r4)

(293-345)

Sigma-70 region 3 (Sigma70_r3)

(204-280)

Sigma-70 region 2 (Sigma70_r2)

(125-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

43.289

83.24

0.36