Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   L3V77_RS14410 Genome accession   NZ_CP091975
Coordinates   3157718..3158233 (-) Length   171 a.a.
NCBI ID   WP_275134755.1    Uniprot ID   -
Organism   Vibrio sp. DW001     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3152718..3163233
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L3V77_RS14385 (L3V77_14370) rimM 3152801..3153355 (-) 555 WP_275134752.1 ribosome maturation factor RimM -
  L3V77_RS14390 (L3V77_14375) rpsP 3153374..3153622 (-) 249 WP_195704272.1 30S ribosomal protein S16 -
  L3V77_RS14395 (L3V77_14380) ffh 3153880..3155274 (-) 1395 WP_195704273.1 signal recognition particle protein -
  L3V77_RS14400 (L3V77_14385) - 3155459..3156256 (+) 798 WP_275134753.1 inner membrane protein YpjD -
  L3V77_RS14405 (L3V77_14390) - 3156359..3157624 (+) 1266 WP_275134754.1 CNNM domain-containing protein -
  L3V77_RS14410 (L3V77_14395) luxS 3157718..3158233 (-) 516 WP_275134755.1 S-ribosylhomocysteine lyase Regulator
  L3V77_RS14415 (L3V77_14400) gshA 3158277..3159842 (-) 1566 WP_275134756.1 glutamate--cysteine ligase -
  L3V77_RS14420 (L3V77_14405) - 3159969..3162821 (-) 2853 WP_275134757.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18875.68 Da        Isoelectric Point: 4.7045

>NTDB_id=654797 L3V77_RS14410 WP_275134755.1 3157718..3158233(-) (luxS) [Vibrio sp. DW001]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFCVPNKEILSEQGIHTLEHLYAGFMRAHLNGAGIEIIDISP
MGCRTGFYMSLIGTPAEERVADAWLAAMEDVLKVENQNNIPELNEYQCGTYGMHSLADAKNIAKNVIEAGILVNKNDELA
LPASMLEELNK

Nucleotide


Download         Length: 516 bp        

>NTDB_id=654797 L3V77_RS14410 WP_275134755.1 3157718..3158233(-) (luxS) [Vibrio sp. DW001]
ATGCCGTTACTAGATAGTTTTACTGTTGATCACACAAGAATGAATGCACCAGCTGTTCGCGTGGCAAAAACTATGCAAAC
GCCCAAAGGGGATACAATAACTGTATTTGATTTGCGTTTTTGTGTGCCAAATAAAGAGATACTCTCTGAACAAGGTATTC
ACACGTTAGAGCATTTATATGCCGGCTTTATGCGTGCACATTTAAATGGTGCGGGTATTGAAATTATCGATATCTCTCCA
ATGGGTTGCCGTACTGGTTTTTATATGAGTTTGATTGGCACTCCAGCAGAAGAGCGCGTAGCAGATGCGTGGTTAGCCGC
GATGGAAGATGTGCTAAAGGTAGAGAACCAAAATAACATTCCAGAGCTAAATGAATATCAATGTGGTACCTATGGTATGC
ACTCTTTAGCCGATGCGAAAAATATCGCCAAAAATGTGATTGAAGCTGGGATTCTAGTAAATAAAAATGACGAGTTAGCT
TTGCCTGCTTCTATGTTGGAAGAGCTGAATAAGTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

84.024

98.83

0.83