Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   L3V77_RS11525 Genome accession   NZ_CP091975
Coordinates   2542573..2544021 (-) Length   482 a.a.
NCBI ID   WP_275134295.1    Uniprot ID   -
Organism   Vibrio sp. DW001     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2537573..2549021
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L3V77_RS11490 (L3V77_11475) moaE 2538082..2538540 (-) 459 WP_275134288.1 molybdopterin synthase catalytic subunit MoaE -
  L3V77_RS11495 (L3V77_11480) moaD 2538542..2538787 (-) 246 WP_275134289.1 molybdopterin synthase sulfur carrier subunit -
  L3V77_RS11500 (L3V77_11485) moaC 2538784..2539263 (-) 480 WP_275134290.1 cyclic pyranopterin monophosphate synthase MoaC -
  L3V77_RS11505 (L3V77_11490) moaB 2539270..2539782 (-) 513 WP_275134291.1 molybdenum cofactor biosynthesis protein B -
  L3V77_RS11510 (L3V77_11495) moaA 2539806..2540795 (-) 990 WP_275134292.1 GTP 3',8-cyclase MoaA -
  L3V77_RS11515 (L3V77_11500) yvcK 2541109..2541996 (+) 888 WP_275134293.1 uridine diphosphate-N-acetylglucosamine-binding protein YvcK -
  L3V77_RS11520 (L3V77_11505) - 2542124..2542468 (-) 345 WP_275134294.1 Hpt domain-containing protein -
  L3V77_RS11525 (L3V77_11510) luxO 2542573..2544021 (-) 1449 WP_275134295.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  L3V77_RS11530 (L3V77_11515) uvrB 2544320..2546350 (-) 2031 WP_275134296.1 excinuclease ABC subunit UvrB -
  L3V77_RS11540 (L3V77_11525) rsxA 2547321..2547902 (+) 582 WP_195703822.1 electron transport complex subunit RsxA -
  L3V77_RS11545 (L3V77_11530) rsxB 2547902..2548480 (+) 579 WP_275134297.1 electron transport complex subunit RsxB -

Sequence

Protein


Download         Length: 482 a.a.        Molecular weight: 53386.17 Da        Isoelectric Point: 6.0752

>NTDB_id=654793 L3V77_RS11525 WP_275134295.1 2542573..2544021(-) (luxO) [Vibrio sp. DW001]
MKKSDLGMTAKYLLMVEDTASVAALYRSFLTPLGIDVEIVGTGKEALESLIIRIPDLILLDLRLPDMTGMDVLHSVKALY
PEVPIIFMTAHGSIDTAVDAMRYGAQDFLIKPCEADRLRVTVNNAIRRASKIKGGEGEQGASVSSLNNYQGFIGSSHNML
SVYKTIDSAATSKASIFITGESGTGKEVCAEAIHAASRRRDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATERHGAA
ELADGGTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSIDVRFVCATNRDPWKEVQQGRFREDLYYRLYVIPLHL
PPLRDRGEDVVEIAYSLLGYMSLEEEKSFTRFAQDVIDRFISYEWPGNVRQLQNVIRNAVVLNNGKEITLNMLPPPINQM
STKIALINNREGLLQDRFGSNNIDSTHEGLQSLSADDITPLWRVERNVIEQAIQACGGNIPQAAHALEVSPSTIYRKKQS
WL

Nucleotide


Download         Length: 1449 bp        

>NTDB_id=654793 L3V77_RS11525 WP_275134295.1 2542573..2544021(-) (luxO) [Vibrio sp. DW001]
ATGAAAAAATCAGATCTTGGTATGACAGCTAAGTATTTGCTTATGGTTGAAGATACCGCTTCAGTTGCAGCTTTATATCG
TTCTTTTTTAACACCTCTCGGCATCGATGTGGAAATTGTTGGTACGGGTAAAGAGGCGTTAGAATCACTGATCATCCGGA
TTCCAGACCTCATCCTCTTAGATTTGCGCCTACCCGATATGACAGGTATGGATGTGCTTCACTCAGTAAAAGCATTGTAC
CCAGAAGTCCCTATCATCTTTATGACGGCTCATGGCTCGATTGATACCGCCGTAGACGCAATGCGATATGGCGCTCAGGA
CTTCTTAATCAAACCTTGTGAAGCGGATAGGCTCAGGGTTACGGTAAATAATGCCATACGCCGAGCCAGCAAAATCAAAG
GTGGTGAAGGCGAGCAAGGAGCAAGCGTTAGCAGCTTGAATAACTATCAAGGCTTTATTGGTAGTAGTCACAATATGCTT
TCGGTATATAAGACGATCGACTCCGCTGCAACAAGCAAAGCGAGTATCTTTATTACGGGTGAAAGCGGTACAGGTAAAGA
AGTCTGTGCTGAAGCGATACACGCTGCGAGCCGCCGAAGAGACAAACCATTCATAGCAATCAATTGTGCCGCGATCCCGA
AAGACTTAATAGAAAGTGAACTGTTTGGTCACGTTAAAGGCGCTTTCACGGGGGCGGCGACTGAACGACACGGCGCCGCA
GAACTTGCCGATGGTGGAACATTGTTTTTGGATGAGCTTTGTGAAATGGATTTGGATCTGCAGACCAAACTATTGCGTTT
TATACAGACGGGTACGTTTCAAAAAGTCGGCTCCTCTAAGATGAAGAGTATTGATGTACGCTTCGTTTGTGCAACCAATA
GGGACCCTTGGAAAGAGGTACAACAAGGACGTTTTAGAGAGGACCTTTATTACCGCTTGTATGTTATTCCGTTGCATTTG
CCTCCATTAAGAGACCGAGGGGAGGATGTCGTCGAGATAGCCTATTCGCTTTTGGGCTATATGTCATTGGAAGAGGAAAA
ATCGTTTACTCGTTTTGCGCAAGATGTAATAGACAGATTCATCTCCTATGAATGGCCTGGAAATGTGCGTCAGCTTCAAA
ATGTAATACGCAATGCTGTTGTATTAAATAATGGAAAGGAAATCACATTAAACATGCTTCCTCCACCAATTAACCAAATG
AGCACAAAAATTGCTTTAATAAACAATAGGGAAGGATTATTGCAAGATAGATTTGGTTCAAACAACATTGATTCCACCCA
TGAGGGTCTCCAATCGTTATCTGCTGATGACATCACGCCTTTGTGGCGGGTTGAGAGAAATGTGATAGAGCAAGCAATTC
AAGCCTGCGGTGGGAATATCCCCCAAGCAGCACATGCATTAGAAGTCAGCCCATCGACTATTTACAGGAAAAAACAGTCA
TGGTTATAG

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(153-318)

Bacterial regulatory protein, Fis family (HTH_8)

(441-477)

Response regulator receiver domain (Response_reg)

(14-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

75.803

96.888

0.734