Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   L3V77_RS10480 Genome accession   NZ_CP091975
Coordinates   2318665..2319840 (-) Length   391 a.a.
NCBI ID   WP_275134105.1    Uniprot ID   -
Organism   Vibrio sp. DW001     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2313665..2324840
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L3V77_RS10465 (L3V77_10455) - 2314601..2315815 (+) 1215 WP_275134102.1 acyltransferase family protein -
  L3V77_RS10470 (L3V77_10460) - 2316025..2316384 (+) 360 WP_275134103.1 5-carboxymethyl-2-hydroxymuconate Delta-isomerase -
  L3V77_RS10475 (L3V77_10465) - 2316539..2318587 (+) 2049 WP_275134104.1 hybrid sensor histidine kinase/response regulator -
  L3V77_RS10480 (L3V77_10470) cqsA 2318665..2319840 (-) 1176 WP_275134105.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  L3V77_RS10485 (L3V77_10475) - 2320138..2320446 (-) 309 WP_275134106.1 helix-turn-helix domain-containing protein -
  L3V77_RS10490 (L3V77_10480) - 2320487..2321302 (-) 816 WP_275134107.1 hypothetical protein -
  L3V77_RS10495 (L3V77_10485) - 2321528..2321698 (-) 171 WP_275134108.1 hypothetical protein -
  L3V77_RS10500 (L3V77_10490) - 2321818..2322015 (-) 198 WP_275134109.1 hypothetical protein -
  L3V77_RS10505 (L3V77_10495) - 2322544..2324160 (-) 1617 WP_275134110.1 alpha/beta hydrolase -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 43466.65 Da        Isoelectric Point: 6.3693

>NTDB_id=654791 L3V77_RS10480 WP_275134105.1 2318665..2319840(-) (cqsA) [Vibrio sp. DW001]
MSNKTKPLPAFIEERLDFYIEDIIESNQNQKHLVLGKRPTADAVIMQSNDYLALSHNKEIQAAHKRAISEQDDNVVMSAV
FLQDEESKPEFENELAEYVGMETCLLSQSGWAANLGLLQTICAPGTPIYIDFFAHMSLWEGARISGGAIYPFMHNNIRHL
RKQIKRHGAGVIVVDSIYSTIGTIAPLEAIYEIANEFGCALVVDESHSLGTHGPNGSGLINALGVQDQVDFVTVSLAKTF
AYRAGAILGPKKLSQTLPFISYPAIFSSTVLPQEVARLRKTLEIIRHAEGKRQTLFRRANELRAGLKAIGFNIRSESQII
SLECGGERNMERVRDFLEENDVFGAIFCRPATGKNKSIMRFSVNADLTVKDVDHVLTVCHEAYKNPNLEFV

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=654791 L3V77_RS10480 WP_275134105.1 2318665..2319840(-) (cqsA) [Vibrio sp. DW001]
ATGAGTAATAAAACGAAACCACTTCCTGCCTTTATTGAGGAACGCCTAGATTTTTATATTGAAGATATAATTGAATCAAA
TCAGAATCAAAAACATTTGGTTTTGGGTAAACGTCCAACCGCAGACGCGGTGATAATGCAAAGTAATGATTACTTGGCAC
TGTCTCACAATAAGGAGATTCAAGCGGCCCACAAACGAGCGATATCTGAGCAAGATGACAATGTTGTTATGTCGGCCGTT
TTTCTGCAGGATGAAGAATCAAAGCCAGAGTTCGAGAATGAGCTTGCAGAGTACGTGGGCATGGAAACCTGTTTGTTGTC
CCAATCTGGTTGGGCTGCGAACCTTGGTCTGTTACAAACTATTTGTGCTCCGGGAACGCCGATCTACATCGATTTTTTTG
CCCACATGTCCTTATGGGAAGGCGCGAGAATATCAGGCGGGGCAATTTATCCATTTATGCACAATAATATCCGGCATCTG
CGTAAACAGATTAAGAGACATGGCGCCGGCGTCATTGTTGTTGATTCGATCTACAGCACAATAGGAACTATTGCACCACT
TGAAGCTATCTACGAAATAGCGAACGAGTTCGGTTGCGCGTTGGTCGTCGACGAATCTCATTCGTTGGGTACCCATGGTC
CGAACGGTTCAGGGCTGATAAATGCATTGGGAGTTCAAGACCAAGTGGATTTTGTTACGGTAAGTTTGGCCAAGACGTTT
GCTTACCGCGCAGGCGCTATTTTGGGCCCCAAGAAACTTAGTCAGACATTACCTTTTATCTCATACCCGGCTATTTTTAG
CTCTACGGTGTTGCCTCAAGAGGTGGCGAGGTTAAGAAAAACACTAGAGATAATTAGACATGCAGAGGGGAAAAGACAAA
CATTGTTCCGTCGTGCGAATGAGCTAAGAGCGGGATTAAAGGCGATAGGTTTTAATATTCGTAGCGAGTCACAGATTATA
TCTTTGGAGTGTGGCGGAGAACGCAACATGGAGCGCGTACGAGATTTCCTAGAAGAGAATGATGTGTTTGGGGCTATTTT
TTGTCGCCCCGCGACGGGAAAGAACAAAAGCATAATGCGCTTTTCGGTCAATGCAGATTTGACCGTCAAAGACGTCGACC
ATGTTTTAACGGTTTGCCATGAAGCGTACAAAAATCCAAACCTAGAGTTTGTGTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(45-376)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

57.623

98.977

0.57