Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   L3V77_RS08150 Genome accession   NZ_CP091975
Coordinates   1756554..1757987 (-) Length   477 a.a.
NCBI ID   WP_275136553.1    Uniprot ID   -
Organism   Vibrio sp. DW001     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1751554..1762987
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L3V77_RS08130 (L3V77_08125) cdd 1752032..1752919 (-) 888 WP_275136550.1 cytidine deaminase -
  L3V77_RS08135 (L3V77_08130) - 1753319..1754689 (-) 1371 WP_275136551.1 DEAD/DEAH box helicase -
  L3V77_RS08140 (L3V77_08135) - 1755500..1756189 (-) 690 WP_275136724.1 LrgB family protein -
  L3V77_RS08145 (L3V77_08140) - 1756189..1756551 (-) 363 WP_275136552.1 CidA/LrgA family protein -
  L3V77_RS08150 (L3V77_08145) sbcB 1756554..1757987 (-) 1434 WP_275136553.1 exodeoxyribonuclease I Machinery gene
  L3V77_RS08155 (L3V77_08150) - 1758083..1758790 (-) 708 WP_275136554.1 NAD(P)H-binding protein -
  L3V77_RS08160 (L3V77_08155) - 1759019..1759630 (+) 612 WP_275136555.1 flavin reductase family protein -
  L3V77_RS08165 (L3V77_08160) cobT 1759662..1760690 (+) 1029 WP_275136556.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  L3V77_RS08170 (L3V77_08165) astE 1760919..1761950 (+) 1032 WP_275136557.1 succinylglutamate desuccinylase -
  L3V77_RS08175 (L3V77_08170) - 1762312..1762884 (-) 573 WP_275136558.1 nucleoside triphosphate pyrophosphohydrolase family protein -

Sequence

Protein


Download         Length: 477 a.a.        Molecular weight: 55324.85 Da        Isoelectric Point: 5.0914

>NTDB_id=654790 L3V77_RS08150 WP_275136553.1 1756554..1757987(-) (sbcB) [Vibrio sp. DW001]
MTNYKNNEQPTFFWFDYETWGISPSKDRPSQFAGVRTDMDFNIIGEPLVIYCQPPVDYLPSPEAALITRITPQKAVQQGL
PEPEFIRRIHDALSTPNTTNLGYNSIRFDDEVTRYTLYRNFFDPYAWSWKNGNSRWDLLDVMRTCYALRPEGISWPVDSE
GLPSFKLEKLSIENGIEHENAHDAMADVIATIELAKKLKAAQPKLFDYLFDMRHKRKLNELVDIINLTPLVHVSGMFGVG
CSNTSWVVPMAWHPKNQNAVIMVNLAMDPTPLLELSSDQIRERMYTKRSDLEVGQQPIPLKLVHLNKCPILAPAKTLTVE
NAERIGINREECLQNLARLKQHPEIREKLIDLYSIDREYADNDNVDNQLYDGFFTPSDRATMDIIREAKPENLAVLDIQF
GDKRIAPLLFKYRARNYVETLSDEEQQRWTRHCRDYFESSLPDYMLNLENLAHEHESDENKLAILKSVYKYVEQLVS

Nucleotide


Download         Length: 1434 bp        

>NTDB_id=654790 L3V77_RS08150 WP_275136553.1 1756554..1757987(-) (sbcB) [Vibrio sp. DW001]
ATGACAAATTATAAAAACAACGAACAGCCTACATTTTTCTGGTTCGACTATGAAACCTGGGGGATAAGCCCGTCAAAAGA
TAGGCCTAGTCAGTTTGCTGGCGTTCGTACCGACATGGATTTCAATATTATTGGCGAACCTCTTGTTATCTATTGTCAAC
CACCTGTTGATTATCTACCTTCACCAGAAGCCGCACTTATCACTCGCATCACACCACAGAAAGCCGTCCAACAAGGTTTG
CCTGAACCAGAATTTATTCGACGTATCCACGACGCTCTCTCAACCCCAAACACCACCAATTTGGGTTATAATAGTATTCG
ATTCGATGATGAGGTCACACGTTACACACTATACCGTAATTTTTTTGACCCATACGCATGGAGTTGGAAGAATGGCAATT
CCCGTTGGGACCTTCTAGATGTAATGAGAACTTGTTACGCACTTCGCCCCGAAGGAATAAGTTGGCCTGTCGATAGTGAA
GGTTTGCCAAGTTTCAAGTTAGAAAAGCTGTCTATCGAAAACGGCATCGAGCACGAGAATGCTCACGATGCGATGGCAGA
TGTCATCGCTACAATAGAACTTGCCAAAAAGCTAAAAGCAGCCCAGCCAAAATTATTTGATTACCTTTTTGACATGCGCC
ACAAACGAAAGCTAAATGAATTAGTTGATATCATCAACTTGACTCCTCTAGTCCATGTATCCGGGATGTTCGGTGTTGGT
TGCTCAAATACCAGTTGGGTTGTACCAATGGCATGGCATCCAAAAAATCAGAATGCTGTCATTATGGTTAACCTTGCCAT
GGATCCAACGCCACTTTTGGAGTTGAGTTCAGATCAAATACGTGAACGTATGTACACTAAACGATCAGACCTTGAAGTCG
GGCAACAGCCTATCCCTTTAAAGTTGGTGCACTTAAACAAATGTCCAATTTTGGCCCCTGCCAAAACGCTCACAGTTGAG
AACGCAGAACGAATCGGTATAAACAGAGAAGAGTGCCTCCAAAACCTTGCTAGACTAAAGCAGCATCCAGAAATTCGCGA
AAAACTGATAGATTTATACTCGATAGATAGAGAGTATGCGGACAACGACAATGTAGACAACCAGCTTTATGACGGTTTCT
TCACGCCTTCAGATAGAGCAACAATGGATATTATCCGGGAAGCCAAACCAGAAAATTTGGCCGTGCTAGATATACAATTT
GGCGATAAACGTATTGCACCGCTTCTGTTTAAATACAGAGCACGCAATTATGTAGAGACGTTGAGTGATGAAGAACAACA
GCGATGGACTCGCCACTGTCGAGACTATTTTGAATCATCACTTCCGGATTACATGCTCAATTTGGAAAACCTCGCTCACG
AACATGAAAGCGATGAGAATAAACTCGCTATCTTAAAGTCCGTGTATAAATATGTTGAACAACTCGTCTCATAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(213-474)

Exonuclease (RNase_T)

(14-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

70.763

98.952

0.7