Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   L3V77_RS03735 Genome accession   NZ_CP091975
Coordinates   766266..767255 (-) Length   329 a.a.
NCBI ID   WP_275135789.1    Uniprot ID   -
Organism   Vibrio sp. DW001     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 761266..772255
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L3V77_RS03700 (L3V77_03700) - 761485..762261 (+) 777 WP_275135783.1 Zn-ribbon-containing protein -
  L3V77_RS03705 (L3V77_03705) - 762273..762716 (-) 444 WP_275135784.1 YaiI/YqxD family protein -
  L3V77_RS03710 (L3V77_03710) - 762713..762994 (-) 282 WP_275135785.1 hypothetical protein -
  L3V77_RS03715 (L3V77_03715) - 763741..764055 (-) 315 WP_195702462.1 DUF3301 domain-containing protein -
  L3V77_RS03720 (L3V77_03720) - 764055..765101 (-) 1047 WP_275135786.1 DUF3549 family protein -
  L3V77_RS03725 (L3V77_03725) - 765183..765494 (+) 312 WP_275135787.1 YqcC family protein -
  L3V77_RS03730 (L3V77_03730) truC 765494..766222 (+) 729 WP_275135788.1 tRNA pseudouridine(65) synthase TruC -
  L3V77_RS03735 (L3V77_03735) cytR 766266..767255 (-) 990 WP_275135789.1 LacI family DNA-binding transcriptional regulator Regulator
  L3V77_RS03740 (L3V77_03740) - 767616..768671 (+) 1056 WP_275135790.1 sugar phosphate isomerase/epimerase -
  L3V77_RS03745 (L3V77_03745) - 768685..769842 (+) 1158 WP_275135791.1 Gfo/Idh/MocA family oxidoreductase -
  L3V77_RS03750 (L3V77_03750) - 769843..771387 (+) 1545 WP_275135792.1 sugar ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 329 a.a.        Molecular weight: 35862.48 Da        Isoelectric Point: 7.6319

>NTDB_id=654782 L3V77_RS03735 WP_275135789.1 766266..767255(-) (cytR) [Vibrio sp. DW001]
MPTIKDVAKLAGVSTATVSRAMAAPEKVSAKNRKKVELAIAECGFTPNAIARNLRKSESKTVVVILPDIANMFFADIVKG
IQLVAQQEGYKVLLGDSVHTVQQAKEYIDLVRTKQADGIISLTSELPSDIQKGANIPIVMACEYFSGFLIPTVRVDNFDS
AKRATEYLIELGHTRIGCITGPMGNPICSDRKQGYIKAESNANIDINDNAFESGDFSFHSGYAAFQRLAVQYEMTALFCF
NDMMALGAMRAAIEMGIDVPKQLSIVGFDDLLFAQYTTPQLTTIRQPQKQLGETAMQVLTKILKGEKVPQDSVIPTQLIV
RSSSTIAAK

Nucleotide


Download         Length: 990 bp        

>NTDB_id=654782 L3V77_RS03735 WP_275135789.1 766266..767255(-) (cytR) [Vibrio sp. DW001]
ATGCCCACAATAAAAGATGTAGCGAAGCTGGCTGGCGTCTCCACCGCGACCGTTTCTAGAGCGATGGCAGCACCAGAAAA
AGTGTCGGCGAAAAATCGTAAAAAAGTGGAATTAGCGATAGCTGAATGCGGTTTTACACCGAATGCCATTGCCAGAAATT
TGCGTAAAAGCGAATCGAAAACTGTGGTTGTCATTTTACCTGATATCGCCAATATGTTTTTTGCTGATATCGTCAAAGGG
ATACAATTGGTTGCCCAACAAGAAGGCTATAAAGTTCTTCTCGGTGACTCTGTTCATACTGTGCAACAGGCAAAAGAATA
CATTGATTTGGTTCGAACAAAACAAGCCGATGGTATCATCAGTTTAACATCGGAGCTTCCAAGTGACATTCAGAAAGGGG
CCAACATTCCGATTGTCATGGCCTGCGAATATTTTAGTGGTTTCCTTATCCCAACCGTCCGCGTAGACAATTTTGACTCT
GCCAAAAGAGCAACGGAATACCTAATTGAACTCGGTCATACAAGAATTGGTTGCATCACTGGTCCAATGGGAAACCCGAT
CTGTAGTGACCGAAAGCAAGGCTATATAAAAGCAGAGAGCAACGCCAATATTGACATCAACGACAACGCGTTTGAATCTG
GAGATTTTAGTTTTCATTCTGGTTACGCCGCCTTTCAAAGGCTCGCTGTCCAATACGAAATGACGGCACTTTTTTGTTTT
AACGATATGATGGCACTAGGTGCTATGCGTGCAGCGATAGAGATGGGTATCGACGTTCCAAAACAACTTTCAATTGTCGG
CTTTGATGACTTATTGTTTGCGCAGTACACGACCCCTCAATTAACCACGATTCGCCAACCTCAAAAACAATTAGGCGAAA
CCGCCATGCAAGTTCTTACAAAGATTCTTAAGGGCGAAAAAGTCCCGCAAGACAGCGTCATACCAACACAACTTATCGTA
AGAAGCAGCTCAACTATCGCGGCTAAATAA

Domains

Predicted by InterproScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(165-324)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

47.904

100

0.486
  cytR Vibrio parahaemolyticus RIMD 2210633

47.416

100

0.474