Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   L3V77_RS02360 Genome accession   NZ_CP091975
Coordinates   475081..476064 (+) Length   327 a.a.
NCBI ID   WP_195702194.1    Uniprot ID   -
Organism   Vibrio sp. DW001     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 470081..481064
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L3V77_RS02330 (L3V77_02330) ispD 470353..471066 (+) 714 WP_275135548.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  L3V77_RS02335 (L3V77_02335) ispF 471147..471629 (+) 483 WP_275135549.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  L3V77_RS02340 (L3V77_02340) truD 471629..472681 (+) 1053 WP_275135550.1 tRNA pseudouridine(13) synthase TruD -
  L3V77_RS02345 (L3V77_02345) surE 472685..473434 (+) 750 WP_275135551.1 5'/3'-nucleotidase SurE -
  L3V77_RS02350 (L3V77_02350) - 473431..474057 (+) 627 WP_275135552.1 protein-L-isoaspartate(D-aspartate) O-methyltransferase -
  L3V77_RS02355 (L3V77_02355) - 474061..475017 (+) 957 WP_275135553.1 peptidoglycan DD-metalloendopeptidase family protein -
  L3V77_RS02360 (L3V77_02360) rpoS 475081..476064 (+) 984 WP_195702194.1 RNA polymerase sigma factor RpoS Regulator
  L3V77_RS02365 (L3V77_02365) mutS 476141..478702 (-) 2562 WP_275135554.1 DNA mismatch repair protein MutS -
  L3V77_RS02370 (L3V77_02370) - 479015..479497 (+) 483 WP_275135555.1 CinA family protein -
  L3V77_RS02375 (L3V77_02375) - 479503..480123 (-) 621 WP_275135556.1 TRIC cation channel family protein -

Sequence

Protein


Download         Length: 327 a.a.        Molecular weight: 37395.69 Da        Isoelectric Point: 4.9851

>NTDB_id=654779 L3V77_RS02360 WP_195702194.1 475081..476064(+) (rpoS) [Vibrio sp. DW001]
MGISNAATKVEEFETNEKALEELGSGRLVQEVKSKKVAKEELEVTAKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRG
DEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIR
LPIHVVKELNIYLRTARELSQKLDHEPTAEEIAEKLDKPVSDVSKMLRLNERVSSVDTPIGGDGEKVLLDIIPDTNHSDP
EVSTQDDDIKNSLIDWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREISLTRERVRQIQVEGLRRLREILLKQGLNMES
LFDVDQM

Nucleotide


Download         Length: 984 bp        

>NTDB_id=654779 L3V77_RS02360 WP_195702194.1 475081..476064(+) (rpoS) [Vibrio sp. DW001]
ATGGGTATCAGCAATGCAGCAACAAAAGTCGAAGAGTTCGAGACAAACGAGAAAGCTCTGGAAGAGCTGGGTTCGGGTCG
TCTTGTACAAGAAGTTAAATCTAAAAAGGTAGCCAAAGAAGAGTTAGAAGTCACCGCTAAAAGCCTAGATGCAACACAGC
TTTATCTTGGAGAAATTGGTTTCTCTCCACTATTAACGGCAGAAGAAGAAGTGTTGTACGCTCGAAGAGCTTTACGTGGC
GACGAAGCAGCACGCAAGCGTATGATTGAAAGCAACCTGCGTCTTGTGGTTAAAATATCACGTCGTTACAGTAACCGAGG
ACTCGCGTTACTTGATCTCATTGAAGAAGGTAACCTAGGCCTTATCCGTGCAGTTGAGAAGTTTGATCCAGAACGTGGGT
TTAGATTCTCTACATACGCCACGTGGTGGATTCGTCAAACAATAGAACGTGCATTGATGAACCAGACACGCACCATCCGT
TTACCCATCCACGTTGTTAAAGAGTTAAATATCTATCTAAGAACCGCGCGTGAACTTTCACAAAAGTTGGATCACGAGCC
TACAGCAGAAGAAATTGCTGAAAAACTAGATAAGCCTGTGAGTGATGTCAGTAAGATGTTACGTCTAAACGAGCGAGTAA
GCTCGGTAGATACACCGATTGGTGGCGATGGCGAAAAAGTACTACTCGATATTATTCCAGATACCAACCATTCAGATCCT
GAAGTATCAACTCAAGATGATGATATTAAAAATTCGCTTATCGACTGGTTAGATGAATTAAATCCTAAGCAGAAAGAAGT
ACTCGCGAGACGGTTTGGATTACTTGGTTACGAACCGTCAACACTTGAAGAAGTCGGCCGTGAAATTAGCTTAACACGTG
AACGTGTACGTCAGATACAGGTGGAAGGTTTACGCCGGCTACGTGAAATCTTACTCAAGCAGGGATTGAATATGGAATCT
CTATTTGATGTCGATCAGATGTAA

Domains

Predicted by InterproScan.

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(50-83)

Sigma-70 region 3 (Sigma70_r3)

(168-241)

Sigma-70, region 4 (Sigma70_r4)

(256-309)

Sigma-70 region 2 (Sigma70_r2)

(88-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

81.928

100

0.832