Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   L7754_RS19110 Genome accession   NZ_CP091971
Coordinates   3770867..3771151 (-) Length   94 a.a.
NCBI ID   WP_000843036.1    Uniprot ID   A0A9W5VII1
Organism   Bacillus cereus strain MB1     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3765867..3776151
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L7754_RS19075 (L7754_19075) tmk 3766059..3766685 (+) 627 WP_000677221.1 dTMP kinase -
  L7754_RS19080 (L7754_19080) holB 3766721..3767704 (+) 984 WP_000169561.1 DNA polymerase III subunit delta' -
  L7754_RS19085 (L7754_19085) - 3767710..3768537 (+) 828 WP_000272429.1 stage 0 sporulation family protein -
  L7754_RS19090 (L7754_19090) yabA 3768552..3768902 (+) 351 WP_000412063.1 DNA replication initiation control protein YabA -
  L7754_RS19095 (L7754_19095) - 3768985..3769725 (+) 741 WP_001055366.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  L7754_RS19100 (L7754_19100) - 3769712..3770002 (+) 291 WP_000414350.1 GIY-YIG nuclease family protein -
  L7754_RS19105 (L7754_19105) rsmI 3769971..3770846 (+) 876 WP_000267821.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  L7754_RS19110 (L7754_19110) abrB 3770867..3771151 (-) 285 WP_000843036.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  L7754_RS19115 (L7754_19115) metG 3771637..3773619 (+) 1983 WP_065381945.1 methionine--tRNA ligase -
  L7754_RS19120 (L7754_19120) - 3773786..3774553 (+) 768 WP_000895851.1 TatD family hydrolase -
  L7754_RS19125 (L7754_19125) rnmV 3774768..3775325 (+) 558 WP_000692835.1 ribonuclease M5 -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10490.17 Da        Isoelectric Point: 4.7174

>NTDB_id=654756 L7754_RS19110 WP_000843036.1 3770867..3771151(-) (abrB) [Bacillus cereus strain MB1]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDGNLSLAEGKIILSKEGAE
QILNELQDYIETAK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=654756 L7754_RS19110 WP_000843036.1 3770867..3771151(-) (abrB) [Bacillus cereus strain MB1]
ATGAAATCTACTGGTATTGTTCGTAAAGTTGATGAATTAGGTCGTGTAGTAATTCCAATCGAATTACGCCGTACTTTAGG
TATTGCAGAAAAGGACGCTCTTGAAATCTATGTTGATGACGAAAAAATCATCTTAAAGAAATATAAACCAAACATGACTT
GCCAAGTAACTGGTGAAGTATCTGACGGTAACCTTTCTTTAGCTGAAGGTAAAATCATCTTAAGCAAAGAAGGCGCTGAG
CAAATCTTAAACGAACTTCAAGATTATATCGAAACAGCAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

85.106

100

0.851