Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   OG429_RS27195 Genome accession   NZ_CP108131
Coordinates   5614868..5616079 (+) Length   403 a.a.
NCBI ID   WP_328927869.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00190     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5609868..5621079
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG429_RS27185 (OG429_27215) - 5612221..5613651 (+) 1431 WP_328927867.1 sugar porter family MFS transporter -
  OG429_RS27190 (OG429_27220) - 5613692..5614678 (-) 987 WP_328927868.1 LLM class flavin-dependent oxidoreductase -
  OG429_RS27195 (OG429_27225) pilA 5614868..5616079 (+) 1212 WP_328927869.1 signal recognition particle-docking protein FtsY Machinery gene
  OG429_RS27200 (OG429_27230) - 5616158..5616826 (-) 669 WP_328927870.1 bifunctional DNA primase/polymerase -
  OG429_RS27205 (OG429_27235) - 5617290..5618747 (+) 1458 WP_328930440.1 hypothetical protein -
  OG429_RS27210 (OG429_27240) - 5619132..5620475 (+) 1344 WP_328927871.1 ammonium transporter -
  OG429_RS27215 (OG429_27245) - 5620472..5620810 (+) 339 WP_328927872.1 P-II family nitrogen regulator -

Sequence

Protein


Download         Length: 403 a.a.        Molecular weight: 42192.33 Da        Isoelectric Point: 4.4834

>NTDB_id=654687 OG429_RS27195 WP_328927869.1 5614868..5616079(+) (pilA) [Streptomyces sp. NBC_00190]
MDILILAVVIALVAVGVISGLVVSSRKKKQLPPPAPSSTPTITAPPAEPQVGEDAAPTVEEPRRTIEEVGLPEAEAPAPV
EEAEPEAPPAPRIEIPEPTAGRLVRLRARLARSQNTLGKGLLTLLSREHLDEDTWEEIEETLLIADVGVAPTQELVDRLR
ERVKVLGTRTPADLRALLKEELLTLVGTDFDRAVKTESGADTPGVVMVVGVNGTGKTTTTGKLARVLVADGRSVVLGAAD
TFRAAAADQLQTWGERVGARTVRGPEGGDPASIAYDAVKEGIAEGADVVLIDTAGRLHTKTGLMDELGKVKRVVEKHGPL
DEVLLVLDATTGQNGLTQARVFAEVVDITGIVLTKLDGTAKGGIVIAVQRALGVPVKLVGLGEGADDLAPFEPEAFVDAL
IGD

Nucleotide


Download         Length: 1212 bp        

>NTDB_id=654687 OG429_RS27195 WP_328927869.1 5614868..5616079(+) (pilA) [Streptomyces sp. NBC_00190]
ATGGACATCCTCATCCTTGCTGTAGTCATCGCCCTGGTCGCGGTCGGCGTGATCAGCGGGCTCGTGGTCAGCAGCCGCAA
GAAGAAGCAGCTGCCGCCGCCGGCACCGTCGAGCACGCCGACCATCACTGCCCCGCCCGCCGAACCCCAGGTGGGGGAGG
ACGCCGCACCGACGGTCGAAGAGCCGCGCCGCACCATCGAGGAGGTCGGCCTTCCCGAGGCGGAGGCTCCCGCTCCCGTG
GAGGAGGCCGAGCCCGAGGCGCCGCCCGCGCCCCGGATCGAGATCCCCGAGCCCACCGCCGGCCGCCTGGTCCGGCTGCG
CGCGCGCCTCGCCCGGTCGCAGAACACCCTCGGCAAGGGGCTGCTCACGCTGCTCTCCCGGGAGCACCTCGACGAGGACA
CCTGGGAGGAGATCGAGGAGACCCTCCTCATCGCCGACGTCGGTGTCGCACCGACCCAGGAGCTGGTCGACCGGCTCCGC
GAGCGGGTCAAGGTGCTCGGCACCCGCACCCCCGCGGACCTGCGCGCCCTGCTCAAGGAGGAGCTGCTGACCCTGGTCGG
CACCGACTTCGACCGCGCCGTGAAGACCGAGAGCGGTGCCGACACGCCGGGCGTCGTGATGGTCGTCGGTGTCAACGGCA
CCGGCAAGACCACCACCACCGGCAAGCTCGCCCGGGTGCTCGTCGCCGACGGCCGCAGCGTGGTGCTCGGCGCGGCCGAC
ACCTTCCGCGCGGCGGCCGCCGACCAGCTCCAGACCTGGGGCGAGCGCGTGGGTGCCCGTACCGTACGCGGCCCCGAGGG
CGGCGACCCCGCCTCGATCGCCTACGACGCGGTCAAGGAGGGCATCGCCGAGGGTGCCGACGTGGTGCTCATCGACACCG
CGGGCCGCCTGCACACCAAGACCGGCCTCATGGACGAGCTCGGCAAGGTCAAGCGTGTCGTGGAGAAGCACGGCCCGCTG
GACGAGGTCCTGCTCGTGCTGGACGCCACCACCGGGCAGAACGGCCTGACCCAGGCCCGCGTCTTCGCGGAGGTCGTGGA
CATCACCGGCATCGTGCTGACCAAGCTCGACGGCACCGCCAAGGGCGGCATCGTCATCGCCGTCCAGCGTGCGCTCGGCG
TCCCGGTCAAGCTCGTCGGCCTCGGCGAGGGCGCCGACGACCTGGCGCCCTTCGAGCCGGAGGCGTTCGTGGACGCCCTG
ATCGGCGACTGA

Domains

Predicted by InterProScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(117-182)

SRP54-type protein, GTPase domain (SRP54)

(204-401)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

38.983

100

0.4