Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   TFKS16_RS13935 Genome accession   NZ_AP013045
Coordinates   3356236..3357606 (+) Length   456 a.a.
NCBI ID   WP_046825495.1    Uniprot ID   -
Organism   Tannerella forsythia KS16     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3351236..3362606
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TFKS16_RS13905 (TFKS16_2994) - 3351255..3351770 (-) 516 WP_060828494.1 HAD hydrolase family protein -
  TFKS16_RS13910 (TFKS16_2995) - 3351776..3352540 (-) 765 WP_060831729.1 Rossmann-like and DUF2520 domain-containing protein -
  TFKS16_RS13915 (TFKS16_2996) - 3352537..3353100 (-) 564 WP_014226390.1 nitroreductase family protein -
  TFKS16_RS13920 (TFKS16_2997) - 3353402..3354490 (-) 1089 WP_014226391.1 aminoglycoside phosphotransferase family protein -
  TFKS16_RS13925 - 3354569..3354823 (-) 255 WP_041590973.1 type B 50S ribosomal protein L31 -
  TFKS16_RS13930 (TFKS16_2999) - 3355047..3356042 (+) 996 WP_041590974.1 class II fructose-bisphosphate aldolase -
  TFKS16_RS13935 (TFKS16_3000) radA 3356236..3357606 (+) 1371 WP_046825495.1 DNA repair protein RadA Machinery gene
  TFKS16_RS13940 (TFKS16_3001) - 3357672..3357968 (+) 297 WP_060828499.1 nucleotidyltransferase domain-containing protein -
  TFKS16_RS13945 (TFKS16_3002) - 3357952..3358296 (+) 345 WP_014226396.1 DUF86 domain-containing protein -
  TFKS16_RS15640 - 3358316..3358483 (+) 168 Protein_2769 DNA repair protein RadA -
  TFKS16_RS13950 (TFKS16_3004) - 3358592..3359731 (+) 1140 WP_060831730.1 hypothetical protein -
  TFKS16_RS13955 (TFKS16_3005) - 3359817..3361403 (+) 1587 WP_060831731.1 FAD-dependent protein -
  TFKS16_RS15090 (TFKS16_3006) - 3361394..3361579 (-) 186 WP_155642493.1 hypothetical protein -
  TFKS16_RS15095 - 3361600..3361746 (-) 147 WP_155642494.1 hypothetical protein -
  TFKS16_RS15100 - 3362275..3362466 (+) 192 WP_155642610.1 hypothetical protein -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 50003.88 Da        Isoelectric Point: 7.3630

>NTDB_id=65468 TFKS16_RS13935 WP_046825495.1 3356236..3357606(+) (radA) [Tannerella forsythia KS16]
MAKVKSVYICSDCGAESPKWVGKCPSCGAWNTYVEELVKKEPAAWRSVPGIVHEGMKPRLLRDVTAKEETRIDMHDAELN
RVLGGGLVKGSLVLVGGEPGIGKSTLVLQTVLQMKDLHTLYVSGEESAQQLKMRADRLAGKDTNMGNCHVYCETNLEQVF
VQAQNLQPDLLIIDSIQTMFTDRAESSPGSITQVRECSAAVLKFAKETGTPVLMIGHINKEGSIAGPKVLEHIVDTVLQF
EGDQHYMYRILRSIKNRFGSTSELGIYEMRQSGLRQVENPSELLLTEGHEGLSGVAIAAAMEGARPFLIETQSLVSSAVY
GTPQRSATGFDLRRMNMLLAVLEKRAGFKLVQKDVFLNIAGGLRVSDPAIDLPVISAVLSSSLDIPIDRSTCMAGEVGLS
GEIRPVNRIEQRIQEAGKLGFTRMIVPQMKGLEALKSKMKIFQVRKVEEAFRELFG

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=65468 TFKS16_RS13935 WP_046825495.1 3356236..3357606(+) (radA) [Tannerella forsythia KS16]
ATGGCTAAAGTTAAATCGGTATATATCTGTTCCGACTGCGGTGCCGAATCGCCCAAGTGGGTCGGCAAATGTCCGTCGTG
CGGCGCGTGGAACACCTATGTAGAAGAACTTGTAAAGAAAGAACCTGCTGCATGGCGGTCTGTTCCGGGAATCGTACATG
AAGGCATGAAGCCCCGGCTGCTGCGCGACGTCACGGCAAAAGAAGAAACACGTATCGATATGCACGATGCGGAGTTGAAC
CGTGTGTTAGGCGGCGGGTTAGTCAAAGGTTCGCTGGTACTTGTCGGGGGAGAGCCGGGCATCGGAAAATCTACGCTGGT
ATTGCAAACCGTTTTGCAGATGAAAGATTTGCATACGCTCTACGTTTCGGGCGAAGAGAGCGCTCAACAGTTAAAGATGC
GTGCCGACCGTCTGGCCGGAAAAGACACCAATATGGGCAATTGCCATGTGTATTGCGAAACGAATCTCGAACAGGTTTTC
GTACAGGCGCAGAACCTCCAACCCGATCTCTTGATTATCGATTCCATCCAGACGATGTTTACCGACCGGGCCGAATCGTC
GCCGGGCAGCATCACTCAGGTGCGCGAGTGCAGCGCAGCCGTGCTGAAGTTTGCCAAAGAGACGGGAACGCCCGTGCTGA
TGATCGGACATATCAATAAGGAAGGCAGCATAGCCGGGCCGAAGGTACTCGAACACATTGTCGATACGGTATTGCAGTTC
GAGGGCGACCAGCACTACATGTATCGCATCCTGCGGAGCATCAAGAACCGTTTCGGAAGCACTTCCGAGTTAGGCATCTA
TGAGATGCGGCAGAGCGGATTGCGGCAGGTCGAGAATCCCTCCGAACTGCTTCTGACCGAAGGTCACGAGGGACTTAGCG
GCGTAGCCATCGCGGCAGCAATGGAGGGCGCCCGTCCTTTTCTGATCGAGACGCAGTCGCTCGTCAGCAGCGCTGTATAC
GGGACGCCTCAGCGCAGTGCGACGGGGTTCGACCTCCGGCGGATGAATATGTTGCTGGCCGTGCTGGAAAAACGCGCCGG
CTTTAAACTCGTACAGAAAGATGTTTTCCTGAACATCGCAGGAGGGCTGCGTGTAAGCGATCCGGCCATCGACCTGCCGG
TGATCAGCGCCGTATTATCGTCGAGTTTGGATATCCCGATTGATCGCAGCACGTGCATGGCGGGCGAAGTGGGGCTTTCG
GGCGAGATACGTCCGGTCAACCGTATCGAACAACGCATTCAGGAAGCCGGAAAACTCGGATTCACACGCATGATCGTTCC
GCAGATGAAAGGATTGGAAGCGTTGAAAAGCAAGATGAAAATCTTTCAGGTCAGAAAAGTAGAAGAAGCCTTCCGGGAGT
TATTCGGATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(344-428)

AAA domain (AAA_25)

(72-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.87

100

0.513
  radA Streptococcus mitis SK321

47.598

100

0.478
  radA Streptococcus pneumoniae D39

47.38

100

0.476
  radA Streptococcus pneumoniae TIGR4

47.38

100

0.476
  radA Streptococcus mitis NCTC 12261

47.38

100

0.476
  radA Streptococcus pneumoniae R6

47.38

100

0.476
  radA Streptococcus pneumoniae Rx1

47.38

100

0.476

Multiple sequence alignment